BAC Information

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BAC

Clone NameMSMg01-333A08
Chromosome4 (Build37)
Map Location 135,213,296 - 135,287,313
singlet/doubletdoublet
Overlap geneIl28ra, Il22ra1
Upstream geneMan1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik
Downstream geneLOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333A08.T7 (MSMg01no333_a08.b1)MSMg01-333A08.TJ (MSMg01no333_a08.g1)
ACCAG448891AG448892
length775756
length of high quality
(start - end)		637 (46 - 682)635 (75 - 709)
definitionCHROMAT_FILE: MSMg01no333_a08.b1 PHD_FILE: MSMg01no333_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:05 2005CHROMAT_FILE: MSMg01no333_a08.g1 PHD_FILE: MSMg01no333_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,286,680 - 135,287,313)(135,213,296 - 135,213,931)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCCACATCACTCCCTGCCTACCAGCCATGTGGCCTCCTTAGAT
GGCAAAGACACCTTCTACACTCAGACCTCGTAGAGGGCAGGATGCTGACA
TACAGACTGGATCACCATGGGGAAATTAGTTAAGCAATTTGATCTCAGCT
CTTCAAGTCTAGAACGGGGACAGTTTGACTCACTTAGCAACGGGCATCAT
GATGACAGCAGCTGCTGACACTTCGGAAGGACCTGCCAGCTGCCAGCCAC
CAGTCCAGGCCACTCTACTCACGACCGCTCTCACCCTCTCTAGATGCTGA
CTGCCGCCGCCATTTCCATTTCATGAATGGGAAAAACGGAGGCTCATCCA
GGGCTGCTCAACAGTGTGACAGCTAGCATTTGACAGTGTCCCAGGGCTAC
ATGGGCTGCATGACTGAGCAGTGAGGCAAGGCCTGTGAAGGTGTCCAGCA
CTTCACAGGACTCTGTCCTGAGTGTAGGAAAGTATGTGGGAAGAAGTGTG
CCCCTCTACCCCTGAAGAGGGGGTATTAGTGGTCTGAGCCCCAATAGGGG
ACCAGTTTAAGGAAGGTGGGAAGAGAGAGAAAGACAGAAGACAGTCTGAG
GAATTTACAACAGAACTAAGGTATATCTCAGAGATAGATTACAGCTTAAT
ACACATATTGGCTTTCACCCTAGCGCCCCAAACCCCCAAGCCCAAAGCAA
AACTAGAAACTGTCCATGTGTTGGG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCACCATCTTTCCTTGTAGAGTGT
CAACTCTTCAGACAAAGAGCTGAGGGCCTGCAAGATGGCTTAGTGGGCAA
AGGCACCTGCTGCTGAGCCAGAAGACCCATGTGGTAGGAGAAAAGAATGA
ACTTCCTTGGGTTGTCCTCTGACCTCCACACATGCAGCCCACCCCCATAG
ACACACACAAATAAATAAAATGTAAAAAAAAAACCCAAAAGAGTAAGGAA
AGTTATTATGAAAATAAAATGGGATTTTTTGTTAATGACATGATAAAATA
GTGTTTGTATTAAACATCACAAATTTTTTATTATTCATTTTGTGCATCCT
AGATTTGCTTTGAACCCATCATCCTCCCGCCTCAGCTTCTCAGGACCCGG
GGGCGAGGGGTGGTATAAGCAGGTGCTACTACACTTCACTTGGCTCTGAA
CTTGGTAATGGTGCACTCAGGTGGCCTGGGTGGTCCCTTTTGGGACGATC
TCTCTTAGGCCCCGGACAGACAGCTGCATGGATGTAAGTTCAGTTCCCAG
AAGGTGCATGAGAAGAGGCCGGTGTGGTGGTACATGCTTGCAGTCCCTGT
ACTGGGGAGGTGGGAGATCTTCCTGGCTTGTTGGCCAACCAGTTTAGCCT
AATTGACAAGCTCCCGGCCAGTGAGAGATTCTGTCTCAAAGGAGGTGGGC
AGCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_a08.b1 MSMg01no333_a08.b1 CHROMAT_FILE:
MSMg01no333_a08.b1 PHD_FILE: MSMg01no333_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:05 2005
         (637 letters)



>mm_chr4_135286476_135287513
          Length = 1038

 Score = 1187 bits (614), Expect = 0.0
 Identities = 629/634 (99%), Gaps = 1/634 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttccacatcactccctgcctaccagccatgtggcctccttagatggcaaagac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gaattccttccacatcactccctgcctaccagccatgtggcctccttagatggcaaagac 779

                                                                       
Query: 65  accttctacactcagacctcgtagagggcaggatgctgacatacagactggatcaccatg 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 778 accttctacactcagacctcgtagagggcaggatgctcacatacagactggatcaccatg 719

                                                                       
Query: 125 gggaaattagttaagcaatttgatctcagctcttcaagtctagaacggggacagtttgac 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gggaaattatttaagcaatttgatctcagctcttcaagtctagaacggggacagtttgac 659

                                                                       
Query: 185 tcacttagcaacgggc-atcatgatgacagcagctgctgacacttcggaaggacctgcca 243
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tcacttagcaacgggcaatcatgatgacagcagctgctgacacttcggaaggacctgcca 599

                                                                       
Query: 244 gctgccagccaccagtccaggccactctactcacgaccgctctcaccctctctagatgct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gctgccagccaccagtccaggccactctactcacgaccgctctcaccctctctagatgct 539

                                                                       
Query: 304 gactgccgccgccatttccatttcatgaatgggaaaaacggaggctcatccagggctgct 363
           ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gactgccaccgccattcccatttcatgaatgggaaaaacggaggctcatccagggctgct 479

                                                                       
Query: 364 caacagtgtgacagctagcatttgacagtgtcccagggctacatgggctgcatgactgag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 caacagtgtgacagctagcatttgacagtgtcccagggctacatgggctgcatgactgag 419

                                                                       
Query: 424 cagtgaggcaaggcctgtgaaggtgtccagcacttcacaggactctgtcctgagtgtagg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cagtgaggcaaggcctgtgaaggtgtccagcacttcacaggactctgtcctgagtgtagg 359

                                                                       
Query: 484 aaagtatgtgggaagaagtgtgcccctctacccctgaagagggggtattagtggtctgag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aaagtatgtgggaagaagtgtgcccctctacccctgaagagggggtattagtggtctgag 299

                                                                       
Query: 544 ccccaataggggaccagtttaaggaaggtgggaagagagagaaagacagaagacagtctg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccccaataggggaccagtttaaggaaggtgggaagagagagaaagacagaagacagtctg 239

                                             
Query: 604 aggaatttacaacagaactaaggtatatctcaga 637
           ||||||||||||||||||||||||||||||||||
Sbjct: 238 aggaatttacaacagaactaaggtatatctcaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1038
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1028
Effective search space:   644556
Effective search space used:   644556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no333_a08.g1 MSMg01no333_a08.g1 CHROMAT_FILE:
MSMg01no333_a08.g1 PHD_FILE: MSMg01no333_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:06 2005
         (635 letters)



>mm_chr4_135213096_135214131
          Length = 1036

 Score = 1162 bits (601), Expect = 0.0
 Identities = 628/637 (98%), Gaps = 3/637 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcaccatctttccttgtagagtgtcaactcttcagacaaagagctgagggcctgcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcaccatctttccttgtagagtgtcaactcttcagacaaagagctgagggcctgcaag 260

                                                                       
Query: 61  atggcttagtgggcaaaggcacctgctgctgagccagaagacccatgtggtaggagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 atggcttagtgggcaaaggcacctgctgctgagccagaagatccatgtggtaggagaaaa 320

                                                                       
Query: 121 gaatgaacttccttgggttgtcctctgacctccacacatgcagcccacccccatagacac 180
           ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gaatgaagttccttgggttgtcctctgacctccacacatgcagcccagccccatagacac 380

                                                                       
Query: 181 acacaaataaataaaatgtaaaaaaaaaa-cccaaaagagtaaggaaagttattatgaaa 239
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 acacaaataaataaaatgtaaaaaaaaaaacccaaaagagtaaggaaagttattatgaaa 440

                                                                       
Query: 240 ataaaatgggattttttgttaatgacatgataaaatagtgtttgtattaaacatcacaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaaatgggattttttgttaatgacatgataaaatagtgtttgtattaaacatcacaaa 500

                                                                       
Query: 300 ttttttattattcattttgtgcatcctagatttgctttgaacccatcatcctcccgcctc 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 ttttttattattcattttgtgcatcctagatttgctttgaacccatcatcctcctgcctc 560

                                                                       
Query: 360 agcttctcaggacccgggggcgaggggtggtataagcaggtgctactacacttcacttgg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcttctcaggacccgggggcgaggggtggtataagcaggtgctactacacttcacttgg 620

                                                                       
Query: 420 ctctgaacttggtaatggtgcactcaggtggcctgggtggtcccttttgggacgatctct 479
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctgaacttggtaatggtacactcaggtggcctgggtggtcccttttgggacgatctct 680

                                                                       
Query: 480 cttaggccccgg-acagacagctgcatggatgtaagttcagttcccagaaggtgcatgag 538
           |||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 cttaggccccggga-agacagctgcatggatataagttcagttcccagaaggtgcatgag 739

                                                                       
Query: 539 aagaggccggtgtggtggtacatgcttgcagtccctgtactggggaggtgggagatcttc 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aagaggccggtgtggtggtacatgcttgcagtccctgtactggggaggtgggagatcttc 799

                                                
Query: 599 ctggcttgttggccaaccagtttagcctaattgacaa 635
           |||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctggcttgttggccaaccagtttagcctaattgacaa 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1036
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1026
Effective search space:   641250
Effective search space used:   641250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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