Query= MSMg01no333_c20.b1 MSMg01no333_c20.b1 CHROMAT_FILE:
MSMg01no333_c20.b1 PHD_FILE: MSMg01no333_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:18 2005
(332 letters)
>mm_chr4_102637452_102638183
Length = 732
Score = 491 bits (254), Expect = e-143
Identities = 298/328 (90%), Gaps = 24/328 (7%)
Strand = Plus / Minus
Query: 5 gaattcacctctcctcactccctcagcacccatcagctgctaacagccctttggctagag 64
|||||||||||||| || ||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 466 gaattcacctctccccattccctcagcacccatcagctgctaatagccctttggctagcg 407
Query: 65 gctcctccatcattgcattatttcttagcataagtttcattagaactattacatgattag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gctcctccatcattgcattatttcttagcataagtttcattagaactattacatgattag 347
Query: 125 aattattatcctagaaaaaaaaactaggttagttatccttaatcatttaaaattcaaagt 184
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 346 aattattaccctagaaaaaaaaattaggttagttatccttaatcatttaaaattcaaagt 287
Query: 185 attagaacacttatgctgtaaccacaattttgctgagctaacttagcaattcctaccaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 attagaacacttatgctgtaaccacaattttgctgagctaacttagcaattcctaccaca 227
Query: 245 ttttaaaaatagattcattatttgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 304
|||||||||||||||||||||||||| ||||||||||
Sbjct: 226 ttttaaaaatagattcattatttgta------------------------tgtgtgtgtg 191
Query: 305 ccactagggagttggaactgaagttgtg 332
||||||||||||||||||||||||||||
Sbjct: 190 ccactagggagttggaactgaagttgtg 163
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space: 233529
Effective search space used: 233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_c20.g1 MSMg01no333_c20.g1 CHROMAT_FILE:
MSMg01no333_c20.g1 PHD_FILE: MSMg01no333_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:18 2005
(345 letters)
>mm_chr4_102454159_102454903
Length = 745
Score = 636 bits (329), Expect = 0.0
Identities = 341/345 (98%)
Strand = Plus / Plus
Query: 1 atggctgggtccacttgtatgttttctgctcctattcctcaaggtggtattttgaaaagg 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 201 atggctgggtccacttgtatgttttctgctcctgttcctcaaggtggtattttgaaaaag 260
Query: 61 acctcccccatctttgcttatctttaagctgcttagcttagagaatctattgaacaccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctcccccatctttgcttatctttaagctgcttagcttagagaatctattgaacaccaa 320
Query: 121 ggtgctgtttaattatcccagcaagctaggacactgaagcacattttctttctctttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgctgtttaattatcccagcaagctaggacactgaagcacattttctttctctttcct 380
Query: 181 tgtgtgacaagtcaccaagtactatcggttggcactcgcttgaaggtgaatctttccatt 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgtgacaagtcaccaagtactatcagttggcactcgcttgaaggtgaatctttccatt 440
Query: 241 gctgcagtccccacagcagaactggaccaaatggcactcctgggatcctgaaatcgattc 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgcagtccccacagcagaattggaccaaatggcactcctgggatcctgaaatcgattc 500
Query: 301 taagctgttcacactcccaggcccgtgtgtgtgtgtgtgtgtgtg 345
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagctgttcacactcccaggcccgtgtgtgtgtgtgtgtgtgtg 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space: 247296
Effective search space used: 247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
