Query= MSMg01no333_f01.b1 MSMg01no333_f01.b1 CHROMAT_FILE:
MSMg01no333_f01.b1 PHD_FILE: MSMg01no333_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:28 2005
(478 letters)
>mm_chr4_48324423_48325300
Length = 878
Score = 607 bits (314), Expect = e-178
Identities = 345/368 (93%), Gaps = 20/368 (5%)
Strand = Plus / Minus
Query: 111 cagctttttttcaaggattctatgaatcaaactcaggtcctcaggcttgtgtaccaggta 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 cagctttttttcaaggattctatgaatcaaactcaggtcctcaggcttgtgtaccaggta 819
Query: 171 cgtactgtacttaactgtctctccagcccaaatagcatatttctaagatcacagatttaa 230
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 818 cgtactgtacttaactgtctttccagcccaaatagcatatttctaagatcacagatttaa 759
Query: 231 gtgggataaacaacatttgaaaagaagtttgctaaatgaaaggaaaggaaaggaaaggaa 290
||||||||||||||||||||||||||||||||||||| |||
Sbjct: 758 gtgggataaacaacatttgaaaagaagtttgctaaat--------------------gaa 719
Query: 291 aggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaagtttaatggggattatacta 350
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 atgaaaggaaaggaaaggaaaggaaaggaaaggaaaggaagtttaatggggattatacta 659
Query: 351 aaagccccaatctatagcagacatgcacaacttactttttctcctctcccaagttgcata 410
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 658 aaagccccaatctatagcagacatgcacgacttactttttctcctctcccaagttgcata 599
Query: 411 atcatggctacttagaagatgtcttgcaactatgtgttcagtcaggatttccacagtgta 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atcatggctacttagaagatgtcttgcaactatgtgttcagtcaggatttccacagtgta 539
Query: 471 gctattag 478
||||||||
Sbjct: 538 gctattag 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 11
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_f01.g1 MSMg01no333_f01.g1 CHROMAT_FILE:
MSMg01no333_f01.g1 PHD_FILE: MSMg01no333_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:28 2005
(630 letters)
>mm_chr4_48145465_48146491
Length = 1027
Score = 1141 bits (590), Expect = 0.0
Identities = 619/630 (98%), Gaps = 3/630 (0%)
Strand = Plus / Plus
Query: 1 aggattaatatttttccatccccatttcttctcttctttacatatggagcataagcgatg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 aggattaatatttttccatccccatttcttctcttctttatatatggagcataagcgatg 260
Query: 61 gctctattgcatcaggatacagaaggaagtatctgctaaactgcttcttgcactggaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctctattgcatcaggatacagaaggaagtatctgctaaactgcttcttgcactggaaga 320
Query: 121 aagtgaaagctcaaaaaaaaaacacggctaatgaaaccttttaccttgagttgagcaatc 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgaaagctcaaaaaaa---cacggctaatgaaaccttttaccttgagttgagcaatc 377
Query: 181 caaagtaaacacgtcagcttcaatatctctccattacaaaggataagaattaggtagatg 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 378 caaagtaaacacgtcagcttcaatatttctccattacaaaggataagaattaggtagatg 437
Query: 241 aactgaatctgaaagggagaaacaagaggtttgtgagctcttaaagccatttcccccttt 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 438 aactgaatctgaaagggagaaacaagaggtctgtgagctcttaaagccatttcccccttt 497
Query: 301 attgtcctactctaagtttgacatttaacatatgtttctcattttgcacgcaaatacctg 360
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct: 498 attgtcctactctaagtttgacatttaacatatgtttctcattttgcatggaaatgcctg 557
Query: 361 ttgtcattgcccttcaatcctagctacaagtgtatgtgatcctatcaatgggaaaggggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttgtcattgcccttcaatcctagctacaagtgtatgtgatcctatcaatgggaaaggggg 617
Query: 421 aaccccacagcaaatcggaggaatagggaatagggttagatgcattggtgattggattag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaccccacagcaaatcggaggaatagggaatagggttagatgcattggtgattggattag 677
Query: 481 ctgtacgaggtgtagtaacagaattaccctggagttagtgccatcgatcctgctttgcct 540
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctgtacaaggtgtagtaagagaattaccctggagttagtgccatcgatcctgctttgcct 737
Query: 541 gaacatgtttcttttagcagttttgcttattatgaaaccttcagacgttatcagatgatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gaacatgtttcttttagcagttttgcttattatgaaaccttcagacgttatcagatgatt 797
Query: 601 atcctggacagatagatggtaatgtctaaa 630
||||||||||||||||||||||||||||||
Sbjct: 798 atcctggacagatagatggtaatgtctaaa 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1027
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1017
Effective search space: 630540
Effective search space used: 630540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
