CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACAAATATTCGGATACACCATACCCAAATATATGAGATGCAATG
AAAGCGGTGCTAAGAGGAAAATTCATAGCTCTAAGTGCCTAAGTAAAGAA
ACTTGAGAGATCCTACACTAGCAACTTAACAGCACACCTGAGAGCTCTAG
AACAAAAAGAAGCAAACATACCCAAGAGGAGTAGACAGCAAGAAATAGTC
AAACTCTGGGCAGAAATCAACCAAAGAGAAACAAAGAGAAAGATACAAGG
AATCAACAAAACCAAAAGCTGGTTCTTTGAGAAAATCAAAAAGATAGATA
AACATCTAGCCAAACTAACTAAAGGGCCCATAGACAGTATCCAAATTAAC
AAAATCATTAATGAAAAGGCACACAAAACAACAGAAAATGAAGAAACTCA
AAAAAATTATCAGATCCTGCTATAAAAGCCTATACTCAACAAAACTGGAA
AATCTAGATGAAACAGATCATTTTCTAAATGGATACCATGTACCAAAGTT
AAATCAAGAGTGGATAAACTATCTAAACTGGCCCATATCCCCTAAGGAAA
TAGAAAAAGTCATTAAAACCCTCCCAACCAAAAAAAAAAAAATGGCGTTA
GTGCAGAATTCTACCGACCAACCCTTCNAAGACGAGGTAATCCCAACACA
CCTCAAACTATTACATANAATAGAAACAGAAGGAACATTA

AAACCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAGGCCCTAACTCAAACT
AGTGAACACTAACAAACCTAAAAGCATTGGAAAGGAGAAAGGAATACTTG
TTCACATCTGTGTAGTGTCAAGTTCTTTAATTGCATCCATTTCCCAGCAC
CTGAAATGTGATATAAGCCCGAATATGCAAAGCTTAAATAAGACATCAAG
TGAATGGGGTAAATGAATTCCCATTTAATTGTTGTGACAATTCCAAGCAA
TGTTTTCTCCATGTGGAATGAAGCTAAGACCCACTGAAAATGTAGTTTCT
TATTCTAACAAAGCTAGAGGCGTTTAGTTTGAAAAAGCTTTCGGAACTCT
AAAATGCTAATTCCTTCTTTGGAAGCCCAACCTATTAATACATCAGGTGC
TGCTTTAGACCGTGCCACTTGGTGTTAAGAGATCAATGATTGACCTCTTT
GTCTAGTTTGGGTCAAAATCCTCAGACTCTGATCTCCCTAGCTTCCTTAT
AGCAATAATTATTATCTTATTACGTTACATGTAATTAGATAAGTAGGAAA
AAAATGCCTCATAGCCCTTGTTTGGGGGAGATTTATTCCACTTTATTCTC
TGTGGGAGCTACTTCATATGCATGTCTTCAGTGAGTGATAGTAGTATTGA
TTTTTTTTTATATTTTATTTTATTTN

Query= MSMg01no333_o08.g1 MSMg01no333_o08.g1 CHROMAT_FILE:
MSMg01no333_o08.g1 PHD_FILE: MSMg01no333_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:10 2005
         (644 letters)



>mm_chr4_74257992_74259035
          Length = 1044

 Score = 1222 bits (632), Expect = 0.0
 Identities = 641/644 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaggccctaactcaaactagtgaacactaacaaacctaaaagcattggaaaggagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 attaggccctaactcaaactagtgaacactaacaaacctaaaagcattggaaaggagaaa 760

                                                                       
Query: 61  ggaatacttgttcacatctgtgtagtgtcaagttctttaattgcatccatttcccagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ggaatacttgttcacatctgtgtagtgtcaagttctttaattgcatccatttcccagcac 700

                                                                       
Query: 121 ctgaaatgtgatataagcccgaatatgcaaagcttaaataagacatcaagtgaatggggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ctgaaatgtgatataagcccgaatatgcaaagcttaaataagacatcaagtgaatggggt 640

                                                                       
Query: 181 aaatgaattcccatttaattgttgtgacaattccaagcaatgttttctccatgtggaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aaatgaattcccatttaattgttgtgacaattccaagcaatgttttctccatgtggaatg 580

                                                                       
Query: 241 aagctaagacccactgaaaatgtagtttcttattctaacaaagctagaggcgtttagttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aagctaagacccactgaaaatgtagtttcttattctaacaaagctagaggcgtttagttt 520

                                                                       
Query: 301 gaaaaagctttcggaactctaaaatgctaattccttctttggaagcccaacctattaata 360
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 519 gaaaaagctttcggaactctaaaatgctaattccttctttggaagtttaacctattaata 460

                                                                       
Query: 361 catcaggtgctgctttagaccgtgccacttggtgttaagagatcaatgattgacctcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 catcaggtgctgctttagaccgtgccacttggtgttaagagatcaatgattgacctcttt 400

                                                                       
Query: 421 gtctagtttgggtcaaaatcctcagactctgatctccctagcttccttatagcaataatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gtctagtttgggtcaaaatcctcagactctgatctccctagcttccttatagcaataatt 340

                                                                       
Query: 481 attatcttattacgttacatgtaattagataagtaggaaaaaaatgcctcatagcccttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 attatcttattacgttacatgtaattagataagtaggaaaaaaatgcctcatagcccttg 280

                                                                       
Query: 541 tttgggggagatttattccactttattctctgtgggagctacttcatatgcatgtcttca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tttgggggagatttattccactttattctctgtgggagctacttcatatgcatgtcttca 220

                                                       
Query: 601 gtgagtgatagtagtattgatttttttttatattttattttatt 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gtgagtgatagtagtattgatttttttttatattttattttatt 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)