BAC Information

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BAC

Clone NameMSMg01-334G12
Chromosome4 (Build37)
Map Location 12,746,532 - 12,746,803
singlet/doubletsinglet
Overlap genenone
Upstream genePpm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988, Runx1t1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334G12.T7 (MSMg01no334_g12.b1)MSMg01-334G12.TJ (MSMg01no334_g12.g1)
ACCAG449911AG449912
length734756
length of high quality
(start - end)
194 (117 - 310)275 (71 - 345)
definitionCHROMAT_FILE: MSMg01no334_g12.b1 PHD_FILE: MSMg01no334_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:49 2005CHROMAT_FILE: MSMg01no334_g12.g1 PHD_FILE: MSMg01no334_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXATGCCCGAGCTGCGCGGAATTCTCAAC
TGTATCATACAGAATGGCTAAGAAGCACCTGAAAAAATGTCCAACATCCT
TAATCATCAGGGACCATGCAAATCAAAACAGCCCTGAGATTCACTCTCAC
ACTAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACATCAGATGCTAGT
CAGGATGTGGTGAAAGAGGAACACTCCTCCATTGCTGGTGTGATTGCAAG
CTGGTACTACCACTCTGGAAATCAGTCTAGGGGTTCCTCAGAAAGTTGGA
CATAGTACTACTTTATTATCCAGTAATACCTCTCCTGGGCATATACTGAG
AAAAATGTTCCAACTTGTAAAATGGACACATGCTCCACTATGTTCATAGC
AGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCTA
CAGAAGAATGGATACAGAAAATGTGGTACATTTACACAATGGTGTACTAC
TCAGCAATTAATGACAATGAATTTATGAAGTTCTTAGGCCAATGGATGTA
TCTGGAGGATATCATCCTGAGTGAGGTAACCCAGTCACAAAAGAACTTCA
CATGATATGCACTCACTGATAAGTGGATATTTACCTAGAAACTTATAATA
CCCAAGATACAAATTTTGCAAAATACATAACCACTCATGAAAGAAGGAAC
AGCCAAAGCGTCGGATACTCTTGTTTCCTCCTTA
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTTCGAGAAATTCATTGTCCATTTCCATTTGGGACTTCCTG
TTTAATTTTATTTCATGAAACCGAGCTAACAAAATGATAGACAATAGTAT
ATGCGTGAGAAATGAGAGACAATGTTAGCTTTTTCTCTTTAGTAGTACAT
ATCTGAAATTGTGAGCTACACAAGCCTCAGCCCATGAACACGAGTAGAAG
TTGGTGAAATCCCTTATTCCCTGATATATTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTTTCCCT
CCTATCCCCTCCCTCTTCCTCTCTCTTCCTCTCTCTCTCCTGAATGATAT
GTTTTATAACCTACAACATTATTCTCTGATTTCCGCCCTATTGATATAAC
TCTCCTCAAGCCCCATTTTTAACTATTTACACACATTCGATTTGCCTATT
GTAAACCCCAGAACCATAAGTTAAATACTATGTGCTCCTTACTACACATC
TCCTTCCTCGTCCCCCCGATGTACTCCTTATTATTTTATAGACTCTTTTT
ATTTATCAGCCTCTTGTATTCCCTTCCCTTGTTTTAATACCCCCCCCCCT
TTATCCATAATTGTACCCTAAAAAACCTTTCATAGTTCCCCGCACGTTTA
CACCCCCCGACTTAGCCACCTCTCGAATTCTACATTTTATTAGCATCCTT
CTCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_g12.g1 MSMg01no334_g12.g1 CHROMAT_FILE:
MSMg01no334_g12.g1 PHD_FILE: MSMg01no334_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:49 2005
         (275 letters)



>mm_chr4_12746332_12747006
          Length = 675

 Score =  480 bits (248), Expect = e-140
 Identities = 267/274 (97%), Gaps = 2/274 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattgtccatttccatttgggacttcctgtttaattttatttcatgaaaccgagctaac 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||
Sbjct: 201 tcattgtccatttccatttgggacttcctgtttaactttatttcatgaaaatgagctaac 260

                                                                       
Query: 61  aaaatgatagacaatagtatatgcgtgagaaatgagagacaatgttagctttttctcttt 120
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatgatagacaatagtatataagtgagaaatgagagacaatgttagctttttctcttt 320

                                                                       
Query: 121 agtagtacatatctgaaattgtgagctacacaagcctcagcccatgaacacgagtagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtagtacatatctgaaattgtgagctacacaagcctcagcccatgaacacgagtagaag 380

                                                                       
Query: 181 ttggtgaaatcccttattccctgatatattctctctctctctctctctctctctctctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggtgaaatcccttattccctgatatattctctctctctctctctctctctctctctct 440

                                             
Query: 241 ctctctctctctctctctctctctctctccctct 274
           |||||||||||||||||||||||||||  |||||
Sbjct: 441 ctctctctctctctctctctctctctc--cctct 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)