BAC Information

Click to search

BAC

Clone NameMSMg01-334H08
Chromosome4 (Build37)
Map Location 75,089,970 - 75,090,262
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040258, LOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
Downstream geneLOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334H08.T7 (MSMg01no334_h08.b1)MSMg01-334H08.TJ (MSMg01no334_h08.g1)
ACCAG449950AG449951
length720743
length of high quality
(start - end)
416 (70 - 485)294 (75 - 368)
definitionCHROMAT_FILE: MSMg01no334_h08.b1 PHD_FILE: MSMg01no334_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:53 2005CHROMAT_FILE: MSMg01no334_h08.g1 PHD_FILE: MSMg01no334_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGAGCTCCGCGGAA
TTCTCACCCATGTCTNAAGAATGGCTGAGAAGCACCTGAAAAAATTATTC
AGCATCCTTAATCATCAGGCAAATGGAAATTAAAAGAACCCCTAAGATTC
TCCAAGCATGTGGAGAAAGAAGTAGTACTATGTCCAATTTTCTGAGGAAC
CCCTGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCAACCAACAA
TGGAGGAGTGTTCCTCTTTCTCCACATCCTTGCCAGCATCTGCTGTCACC
TGAATTTTTGGTCTTATTTATTCTGACTGGTGTAAGATGGAATCTCAAGT
ATGGTTTTAGCTCCCTTGTCAAAGAACAAGTGATCATATGTGTGTGGTTC
ATTTCTGGGTCTTCAATTCTATTCCACTAGTCTACTTGTCTGTCGATATA
CCAATACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTTTAGGT
CAGGCATGGTGATTCCACTAGAGGTTCTTTTATCCTTGAGAAGAGCTTTT
GCTGTACAAGGCTCCTCCTTATTCCATATGACTTTGCATATTGCCTTTTC
TATTTCGCTGAATAATCTGACCTGTTATCTTGTTGCTTTTCGCATTTACT
CTGTACATTGCCTTTGTTCATACCTCCTTTCTTCCATATGTATCATCTGC
CTCTCCTTTACACCCCATTT
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCAAAAAATTCCCACTGAATGGAACTTAAAGATGAGAGA
CATCAAAGCCCACCTTCCACAGTGATATACTTCCTCTAACTAGGCTACAC
TTATTTCATCAAGGCTATGTTTCCTAATACTGCCGTTCTGTATGGGTCAA
AATTTCAAACACGTGAATCTATGGCTGTGAAGTCTATTGATACAACCACA
GATGTGTTTTCCAGGTGATCCTAAATCCTATTAGGTCTAAACCCACATAA
CATCTTTCCCATTCTTTTTTTTGATACTTAATGTCAGTTGCTTCATGTTT
CACTCTATGTATCTACATAATGACAACGAGAACTCTAGTTACCTTAAAGA
TTTCCCAAAATTGCTGCTTGAGATCATAGGACAGTAATTGGCTATCTACA
GCTAATATCACTACTTACTTGTATAATGTAATCAGACTGACAATGACTAA
TCACTCACAGACAGAACTAATTTTATCTTTCCAGAGTCATGATCATTCTT
TCATTGCCATTCCTACTCCCACAGGTGCAAAATCTAACCTTAACACATCT
AACTAGCGACATTACTCTATGTTTTATTTAGGGCACTTCCCAGTTTTTTT
TCCTTCTAACCCCTCCGCCTTTTAATACACCTCTCTACACCCGATTATTT
GCCATTTCCACCCTTTGCTCCCTATTCACCCCGTTATTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_h08.g1 MSMg01no334_h08.g1 CHROMAT_FILE:
MSMg01no334_h08.g1 PHD_FILE: MSMg01no334_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:54 2005
         (294 letters)



>mm_chr4_75089594_75090287
          Length = 694

 Score =  501 bits (259), Expect = e-146
 Identities = 284/299 (94%), Gaps = 12/299 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaatggaacttaaagatgagagacatcaaagcccaccttccacagtgatatacttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 actgaatggaacttaaagatgagagacatcaaagcccaccttccacagtgatatacttcc 610

                                                                       
Query: 61  tctaactaggctacacttatttcatcaaggctatgtttcctaatactgccgttctgtatg 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 609 tctaactaggctacacttatttcatcaaggctatgtttcctaatagtgccgttctgtatg 550

                                                                       
Query: 121 ggtcaaaatttcaaacacgtgaatctatggctgtgaagtctattgatacaaccacagatg 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 549 ggtcaaaatttcaaacacgtgaatctatggatgtgaagtctattgatacaaccacagatg 490

                                                                       
Query: 181 tgttttccaggtgatcctaaatcctattaggtctaaacccacataacatctttcccatt- 239
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 489 tgttttcctggtgatcctaaatcctattaggtctaaacccacataacatctttcccattc 430

                                                                      
Query: 240 -----cttttttttgatacttaatgtcagttgcttcatgtttcactctatgtatctaca 293
                |      |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggagcc------ttgatacttaatgtcagttgcttcatgtttcactctatgtatctaca 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)