TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAACTCTAACTATAATTATCATGGCTCCATTCTTACATTTTCATGC
ATCTTGCAAAATGGAGAATACTGTAAATAACAGTAATTAAAAATAACAAT
AATTGATTACACTGTTTTTCCTAATCATTTTTGTGTTAATCTTACTTTTA
CATAATAAAATATGGCATGTTTCTCGCCATATATGTTTTTATGAATAACT
TATCAAAAGAATATATACTATCCATATTATTCAAATACATTTCCCTTTCT
ATATCCATCCTTTTCTCACACAAGTTCACAATATAGTTAATGATATCATT
TTGATTTTGAATTAAGTAGGTGAAAACGGCTCTTTATTTTTGTTTTGTAT
CTTTTTTTATTAGATATTTTATTTACATTTTATATGTTATCCTCTTTCCT
GGTTTTCCCTCCGAAAACCCCCTATCCCCACCACCCTCCCCCTGTTCACC
AACCCACCCACTCCCATTTCCTGGCTCGGAATTCCCTTATACTGGAGCAT
AGAGCCTTTCTAGGACCAAGGACCTCTCCTCCCATTGATGACTGACAAGG
TCATCCTCTGCTACATACGTGGCTGGAGCCAAAGATCGTTCATGTATATT
CTTTGGTTGGTGGTTTAGTCCCTGGCAGCTATGGGGGTACTGGTTGGTTC
ATATTGTTGTTCCTCTATGCG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCCCGCGAAATTCTAACAGTCGCTGCTGAGAGTATATGGG
AAGGGAGCAAGTCAGTTATATTTAGAACCAGTTTTAAAAGGAAAACAGGA
TGGATATAAGAATCAGTGTCTATCATATCTTTTTGAATCTTATCATGTTA
TCTTGTCATGTCTCATTCCATCTACCTATGAATGTTTCTGGCAGGGCAGT
TTGTAGCACGTGTCCTGGTATGCCAAATATCCTTAAAATGTGGTATTATT
TTTCAAGGTTTTCTCATCTATTATTTTTCACTGGAATTTATTTAATAAAG
ACATGCAAAATTCTGTCATGATTGAATATAAGGTAAAAGGGCATCTTGTG
TCCTCACTCTCAGGCCAAATCTCAATCTTCCCTTTGTACATAGTGGAGAT
TAATTTTGATTCATGTTGTTCTAAAAGTGATAGAAATTTAAAAGATGTTA
CAATTAATCTTTAGATTTCTTATGCCAGACAACTTGTCCTGTTGCTAAGA
AAACAACACTATTACAGAACAAACCAATCAGCTATTAGAATAAGACATCC
TTGCTCAGAAGTAAGAATTGAACCTTCTAGAGAAGAGAGGTTTCTTTCTA
TCTCTGTTCCCTCCACTACATACAACTTCCAATTGCAAAGTAATAGAAAC
TTAATTCAGGAAAGAGGTATATC

Query= MSMg01no334_p10.b1 MSMg01no334_p10.b1 CHROMAT_FILE:
MSMg01no334_p10.b1 PHD_FILE: MSMg01no334_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:34 2005
         (642 letters)



>mm_chr4_17158436_17159477
          Length = 1042

 Score = 1152 bits (596), Expect = 0.0
 Identities = 632/644 (98%), Gaps = 3/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taattatcatggctccattcttacattttcatgcatcttgcaaaatggagaatactgtaa 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 taattatcatggctccattcttatattttcatgcatcttgcaaaatggagaatactgtaa 260

                                                                       
Query: 61  ataacagtaattaaaaataacaataattgattacactgtttttcctaatcatttttgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataacagtaattaaaaataacaataattgattacactgtttttcctaatcatttttgtgt 320

                                                                       
Query: 121 taatcttacttttacataataaaatatggcatgtttctcgccatatatgtttttatgaat 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 taatcttacttttacataataaaatatggcatgtttctcaccatatatgtttttatgaat 380

                                                                       
Query: 181 aacttatcaaaagaatatatactatccatattattcaaatacatttccctttctatatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacttatcaaaagaatatatactatccatattattcaaatacatttccctttctatatcc 440

                                                                       
Query: 241 atccttttctcacacaagttcacaatatagttaatgatatcattttgattttgaattaag 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccttttctcatacaagttcacaatatagttaatgatatcattttgattttgaattaag 500

                                                                       
Query: 301 taggtgaaaacggctctttatttttgttttgtatctttttttattagatattttatttac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggtgaaaacggctctttatttttgttttgtatctttttttattagatattttatttac 560

                                                                       
Query: 361 attttatatgttat-cctctttcctggttttccctccgaaaaccccctatccccaccacc 419
           |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 attttatatgttattcctctttcctggttttccctctgaaaaccccctatccccaccacc 620

                                                                       
Query: 420 ctccccctgttcaccaacccacccactcccatttcctggctcgga-attcccttatactg 478
           ||||||||||||||||||||||| |||||||||||||||| |||  ||||||||||||||
Sbjct: 621 ctccccctgttcaccaacccaccaactcccatttcctggc-cgggcattcccttatactg 679

                                                                       
Query: 479 gagcatagagcctttctaggaccaaggacctctcctcccattgatgactgacaaggtcat 538
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 680 gagcatagagcctttctaggaccaaggacctctcctcccattaatgactgacaaggtcat 739

                                                                       
Query: 539 cctctgctacatacgtggctggagccaaagatcgttcatgtatattctttggttggtggt 598
           ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 740 cctctgccacatacgtggctggagccaaagatcgttcatgtatactctttggttggtggt 799

                                                       
Query: 599 ttagtccctggcagctatgggggtactggttggttcatattgtt 642
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttagtccctggcagctatgggggtactggttggttcatattgtt 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)