Query= MSMg01no335_c05.b1 MSMg01no335_c05.b1 CHROMAT_FILE:
MSMg01no335_c05.b1 PHD_FILE: MSMg01no335_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:48 2005
(571 letters)
>mm_chr4_40127701_40128674
Length = 974
Score = 998 bits (516), Expect = 0.0
Identities = 559/576 (97%), Gaps = 7/576 (1%)
Strand = Plus / Minus
Query: 1 aggaacgtcttgtggtcattgtgacggtctggagcaacttggaaacctttaaatccttgc 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 aggaacgtcttgcggtcattgtgacggtctggagcaacttggaaacctttaaatccttgc 715
Query: 61 tgtgggaagggaaggttgaaaatattgcacgtagtaagaaagaaataggacacacacagt 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tgtgggaagggaaagttgaaaatattgcacgtagtaagaaagaaataggacacacacagt 655
Query: 121 ctgctataaagagaaaaatatatatgaccagaacttctcactctggaagaactttggtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ctgctataaagagaaaaatatatatgaccagaacttctcactctggaagaactttggtaa 595
Query: 181 taattttaagtgccaactgttaacagaacaaacacttctatgagtagactttgaaatagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 taattttaagtgccaactgttaacagaacaaacacttctatgagtagactttgaaatagc 535
Query: 241 ccagaaaatttcactttttaaaaattcacgaaggcagttgtgagtcctgaatcttgctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ccagaaaatttcactttttaaaaattcacgaaggcagttgtgagtcctgaatcttgctca 475
Query: 301 gcaatgaagttaataccaattgctttcttccctcctc----aagactcggagattaaatc 356
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 474 gcaatgaagttaataccaattgctttcttccctcctccagtaagactaggagattaaatc 415
Query: 357 tatacacagttcgaagttagcctgcaaagagccctgattcattagtgtgcagttcagtgg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tatacacagttcgaagttagcctgcaaagagccctgattcattagtgtgcagttcagtgg 355
Query: 417 gtgtggcctgagcctacggattctgaccacatggaaatttggaggtgatatttactaata 476
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 354 gtatggcctgagcctactgattctgaccacatggaaatttggaggtgatatttgctactg 295
Query: 477 tcactgtcaattactctcatcagtaatgtaaggcacagctgaa-atctggtataactaac 535
||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct: 294 tcactgtcaattactctcaccagtaatgtaaggcacagctgaacatctgg--taactaac 237
Query: 536 actgatgccttgtggataagatccatctcaacctct 571
||||||||||||||| ||||||||||||||||||||
Sbjct: 236 actgatgccttgtgggtaagatccatctcaacctct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 974
Length adjustment: 10
Effective length of query: 561
Effective length of database: 964
Effective search space: 540804
Effective search space used: 540804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_c05.g1 MSMg01no335_c05.g1 CHROMAT_FILE:
MSMg01no335_c05.g1 PHD_FILE: MSMg01no335_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:48 2005
(518 letters)
>mm_chr4_39937451_39938368
Length = 918
Score = 936 bits (484), Expect = 0.0
Identities = 508/516 (98%), Gaps = 2/516 (0%)
Strand = Plus / Plus
Query: 1 ccatcgatagtggttagtttttcccatgaaacaaaaagagctttaaattttacatttgct 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatcgatagtggtaagtttttcccatgaaacaaaaagagctttaaattttacatttgct 260
Query: 61 tatttaatgattgctgggcaggatctgcttcaggatgcagatagaacctgaggtcttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttaatgattgctgggcaggatctgcttcaggatgcagatagaacctgaggtcttctc 320
Query: 121 taaaggtgtttcactcttcttgagcctacaggcacgtgcaacttgttcttctcagaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaggtgtttcactcttcttgagcctacaggcacgtgcaacttgttcttctcagaaaga 380
Query: 181 aggacagcagtaatgggagaagcagctcacaatatcttctaaggcctctcctcaggacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggacagcagtaatgggagaagcagctcacaatatcttctaaggcctctcctcaggacct 440
Query: 241 ccttattggcataagaccaatggggtggggaggatatttcataccttctagtgagggttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttattggcataagaccaatggggtggggaggatatttcataccttctagtgagggttt 500
Query: 301 ttacagagtcatgtgataaagcacacagccacataaagaaacatatatattaatata-ta 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 501 ttacagagtcatgtgataaagcacacagccacgtaaagaaacatatatattaatatacta 560
Query: 360 ataatataaaattaatcatattagtatattaatatatatggctgagaaaatagaaactgc 419
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 561 ataatataaa-ttaatcatattagtatattaatatatatggctgagaaaatggaaactac 619
Query: 420 tatctgttcacagtttgctatgcaaaacaagttcttaacatctttgtgctgataatgtgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatctgttcacagtttgctatgcaaaacaagttcttaacatctttgtgctgataatgtgt 679
Query: 480 gtatgtatgcatatattatgcatacatatatgtatg 515
||||||||| |||||||||||||| |||||||||||
Sbjct: 680 gtatgtatgtatatattatgcatatatatatgtatg 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
