BAC Information

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BAC

Clone NameMSMg01-336A19
Chromosome4 (Build37)
Map Location 112,414,001 - 112,414,343
singlet/doubletsinglet
Overlap geneA030001H23Rik
Upstream geneSpata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581
Downstream geneLOC433745, LOC545668, LOC230622, LOC100040607, LOC242627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336A19.T7 (MSMg01no336_a19.b1)MSMg01-336A19.TJ (MSMg01no336_a19.g1)
ACCAG451162AG451163
length736738
length of high quality
(start - end)		535 (43 - 577)559 (73 - 631)
definitionCHROMAT_FILE: MSMg01no336_a19.b1 PHD_FILE: MSMg01no336_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:01 2005CHROMAT_FILE: MSMg01no336_a19.g1 PHD_FILE: MSMg01no336_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATAGTTAACAAGTTTCTGTTAATGTTCATTTTCAATGGGTTGTTACC
TATATCCCATATATGAATAGCCACAATTAAGACGAAAGCAATACCCTAAG
GCAAACACAAGTTTTAAAGACAAAAAATATCAGTCAGAGAAAAATGATAA
ATCAGATTTCATTAAATTGAGTAATTTCTGTACATCACAATATGGGAAAA
AAAGAGAAAGCCAAGACTAGAACATATCTATACTATATCTGAGAGAAAAC
ATAACAAACAACAACAACAAAAACTGTGTTCAAAATAAATGACAAGTGCT
ATAAATAAAGTTAATTTTCTAAATGAAAAATCAAGATAGAGAACTTCAGA
CCAATTTCCCTTATGAATATCGATGCAAAAATCCTCAATAAAAATCTCGC
TAACCGAATCCAAGAACACATTAAAACAATCATCCATCCTGACCAAGTAG
GTTTTATTCCAGGGATGCAGGTATGGTTTAATATATGAAAAATCAATAAA
TGTATTTAATTTAAAGAGATGATACCATAATGATCAATAAGTGTATGTAA
AGTTGTTAAAAATCATCACTCATCAGAAAATGCAAAGAAAACCTCATTGA
GATGTATGAATCATGTAGCCTAACAATATCTATTAAAATTCTCCCAACAC
AGAAGAGATGCTTTCTTCTTAGCACTAAAGGATATT

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTACGAACTTTATAAGCCAGTACTTG
ATAAAAATTATTAAACAACTGCTTTTTAACTACACTTTGTACTGAGAAAG
ACAAAGAAAATTCTATACTATTGTACATACTTACCACATAAACACATAAT
AGAGGAAAGGTCTTCTATGGAGAATGCTAAATATTAAAACTCTATGTCAA
TGTTAGAGCAAGAAAAGACATTTCGCCATAACTACCAAATATACTATATG
GATAAATTCTCCATTCAATTAGTTTTATTACATGGACAGTATTTTGTTGG
CAGCTTCTTACTAAGATTCTTCAGAGAAAATCTATAAGGAATCACAAACC
ACTCCAATATGCTAATTGTGATATAACTGAATCTAATGTGACAATAAAGA
AGATTCTATTTGATATCTGTAAACAAAGGAGTACAAAAGTGTACATGAAC
TAATGGTTAGGATCCATGATGGCCTTTCATTCAGTTATAAATAATAGAAT
GTTAATTCTTAGGACATAAGGTGAATACAACAGGAAATTATTATTTTAAC
TGATATACTGCCAAAACATATATCATGATTTTCCACCTTGTGGAGTGGAA
TGTTTCCATAATCAGGTTAAAATGCTATGTAAAAGTGTTCATAGAAACAC
AATATNAAGATAATTGATTCTGGCTCTGAACTCACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_a19.b1 MSMg01no336_a19.b1 CHROMAT_FILE:
MSMg01no336_a19.b1 PHD_FILE: MSMg01no336_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:01 2005
         (535 letters)



>mm_chr4_112413797_112414736
          Length = 940

 Score =  553 bits (286), Expect = e-161
 Identities = 327/344 (95%), Gaps = 7/344 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatagttaacaagtttctgttaatgttcattttcaatgggttgttacctatatc 64
           ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattcaatagttaagaagtttctgttaatgttcattttcaatgggctgttacctatatc 264

                                                                       
Query: 65  ccatatatgaatagccacaattaagacgaaagcaataccctaaggcaaacacaagtttta 124
           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 ccatatgtgaatagccacaattaagacaaaagcaataccctaaggcaaacacaagtttta 324

                                                                       
Query: 125 aagacaaaaaatatcagtcagagaaaaatgataaatcagatttcattaaattgagtaatt 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 aagacaaaaaatatcagtcagagaaaaatgataaatcagatttcatgaaattgagtaatt 384

                                                                       
Query: 185 tctgtacatcacaatatgggaaaaaaagagaaagccaagactagaacatatctatactat 244
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 tctgtacatcacaatatgg-aaaaaaagagaaagtcaagactagaacatatctatactat 443

                                                                       
Query: 245 atctgagagaaaacataacaaacaacaacaacaa------aaactgtgttcaaaataaat 298
           ||||||||||||||| ||||||||||||||||||      ||||||||||||||||||||
Sbjct: 444 atctgagagaaaacaaaacaaacaacaacaacaacaacaaaaactgtgttcaaaataaat 503

                                                       
Query: 299 gacaagtgctataaataaagttaattttctaaatgaaaaatcaa 342
           |||  |||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 gacgggtgctataaataaagttagttttctaaatgaaaaatcaa 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 940
Length adjustment: 10
Effective length of query: 525
Effective length of database: 930
Effective search space:   488250
Effective search space used:   488250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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