BAC Information

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BAC

Clone NameMSMg01-336E06
Chromosome4 (Build37)
Map Location 17,791,345 - 18,011,331
singlet/doubletdoublet
Overlap geneMmp16
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336E06.T7 (MSMg01no336_e06.b1)MSMg01-336E06.TJ (MSMg01no336_e06.g1)
ACCAG451327AG451328
length722719
length of high quality
(start - end)		548 (44 - 591)529 (73 - 601)
definitionCHROMAT_FILE: MSMg01no336_e06.b1 PHD_FILE: MSMg01no336_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:17 2005CHROMAT_FILE: MSMg01no336_e06.g1 PHD_FILE: MSMg01no336_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,791,345 - 17,791,888)(18,010,803 - 18,011,331)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGGACCTGAGTTCATTATGAAAGTTTTACCTGGAGTAAAACTGAA
TAGAGGGCCTAGATTTGACTGCTTGATTCAACAGTGATTATCTGATAATC
AATAAAGTTTTAGTGTTAAATATCCATTATGATTTGTAAGCATTAGAAAT
GTATAACCTATCTAAGACCTAATCTGACATTCCATATTATGTAAGCTGAA
TTATAATCTTTTTCTCAACAATTTGTAGCAATGTAGTTTACTACTGAATA
TGTTCAGAGGTCATAAACATTTCAGCATATTTTATGATGAAATTTACTGA
CCATTTTAGAAACATAAAAGAAAACTTTCATCAGAGGTGGACATTATGAT
GACCTGCAGGAAAGCATGTTTGTGTGAAAGACTGTGTGTTTGGGTGTGTC
TGTAGCCTGTAGTGTTATATGGTTTTTGATAATTTCTGTGTTTATATTTT
TATTAGTTGTATCGAAAGTTCAAGATAACAAATATGTAATTTCAAAATGT
TCATTTGTAATATAAAGGAAATTTCTTAATAGGGAAGAACATACATACAC
ACGGAATGACTGGATATACAGAGAGAGATAGATAGAGAGAGGTAGAGAGA
GAGAGAGATACATGCTTCTTAATATAAATGAGTAAAATCTTACATCTTAT
ATCAATGGCCTCATATCCAGTC

TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCAAGAAGAGCAAGGCAAGGCACCCTGA
AAAACTCCTAAGTGAGGTTGTTTCAGTGGTCACTGGCAGTTGTTGCCATA
ACAGCAGAGACTAACTCTCATTACCATTGCCTAATTGCTTTATGCTAATA
TGCTCTTGAGAACATTTCTTCTGCTCCCACTGTTCCACTCAGCTCTGTTT
ACTCAAAAACAGAGTTCAAAAGGTAATTGCCCTTTCTTACACTCCAAGTG
AATCCTCAGCAAAGATCTTGATGGTAAAACCCTTTCTACCAAGGTGCCTG
AGGGAAATCAGATGACCTCAATGTTAGAAAATGGAAAGTCCTGAAATCTT
GCTTCATGACTATCTGGGAAGAAAAATGTAGGGCAACATGGGATATTTTA
TGCATCATTAAAATAAGAATAAGCTTCCTAATCATGCTATCCTGTAATGT
AGCCTTGGATGTTAATGGAGGTACAGAGAGACCAGAACTCATTGTGTAAC
AACTAGGCTACCCTGGCATTCATTGTATAATAGTGGCCCACCTGCTTCAC
ACTCATGGCCATCATTCTAGCTCAGCCTTTAGAGTACATGTCTATGCTTT
TGCCGTTTTGAAATTTATTTTGAGAAACTATTAATCTAAAGACTATCCAA
TGAGTGAACTTAATAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_e06.b1 MSMg01no336_e06.b1 CHROMAT_FILE:
MSMg01no336_e06.b1 PHD_FILE: MSMg01no336_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:17 2005
         (548 letters)



>mm_chr4_17791141_17792088
          Length = 948

 Score = 1036 bits (536), Expect = 0.0
 Identities = 542/544 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagggacctgagttcattatgaaagttttacctggagtaaaactgaatagaggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagggacctgagttcattatgaaagttttacctggagtaaaactgaatagaggg 264

                                                                       
Query: 65  cctagatttgactgcttgattcaacagtgattatctgataatcaataaagttttagtgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctagatttgactgcttgattcaacagtgattatctgataatcaataaagttttagtgtt 324

                                                                       
Query: 125 aaatatccattatgatttgtaagcattagaaatgtataacctatctaagacctaatctga 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatatccattatgatttttaagcattagaaatgtataacctatctaagacctaatctga 384

                                                                       
Query: 185 cattccatattatgtaagctgaattataatctttttctcaacaatttgtagcaatgtagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattccatattatgtaagctgaattataatctttttctcaacaatttgtagcaatgtagt 444

                                                                       
Query: 245 ttactactgaatatgttcagaggtcataaacatttcagcatattttatgatgaaatttac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttactactgaatatgttcagaggtcataaacatttcagcatattttatgatgaaatttac 504

                                                                       
Query: 305 tgaccattttagaaacataaaagaaaactttcatcagaggtggacattatgatgacctgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaccattttagaaacataaaagaaaactttcatcagaggtggacattatgatgacctgc 564

                                                                       
Query: 365 aggaaagcatgtttgtgtgaaagactgtgtgtttgggtgtgtctgtagcctgtagtgtta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggaaagcatgtttgtgtgaaagactgtgtgtttgggtgtgtctgtagcctgtagtgtta 624

                                                                       
Query: 425 tatggtttttgataatttctgtgtttatatttttattagttgtatcgaaagttcaagata 484
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatggtttttgataatttctgtatttatatttttattagttgtatcgaaagttcaagata 684

                                                                       
Query: 485 acaaatatgtaatttcaaaatgttcatttgtaatataaaggaaatttcttaatagggaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acaaatatgtaatttcaaaatgttcatttgtaatataaaggaaatttcttaatagggaag 744

               
Query: 545 aaca 548
           ||||
Sbjct: 745 aaca 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no336_e06.g1 MSMg01no336_e06.g1 CHROMAT_FILE:
MSMg01no336_e06.g1 PHD_FILE: MSMg01no336_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:17 2005
         (529 letters)



>mm_chr4_18010603_18011531
          Length = 929

 Score =  992 bits (513), Expect = 0.0
 Identities = 525/529 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaagaagagcaaggcaaggcaccctgaaaaactcctaagtgaggttgtttcagtggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ccaagaagagcaaggcaaggcaccctgaaaaactcctaagtgaggttgtttcagtggtca 670

                                                                       
Query: 61  ctggcagttgttgccataacagcagagactaactctcattaccattgcctaattgcttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ctggcagttgttgccataacagcagagactaactctcattaccattgcctaattgcttta 610

                                                                       
Query: 121 tgctaatatgctcttgagaacatttcttctgctcccactgttccactcagctctgtttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgctaatatgctcttgagaacatttcttctgctcccactgttccactcagctctgtttac 550

                                                                       
Query: 181 tcaaaaacagagttcaaaaggtaattgccctttcttacactccaagtgaatcctcagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tcaaaaacagagttcaaaaggtaattgccctttcttacactccaagtgaatcctcagcaa 490

                                                                       
Query: 241 agatcttgatggtaaaaccctttctaccaaggtgcctgagggaaatcagatgacctcaat 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agagcttgatggtaaaaccctttctaccaaggtgcctgagggaaatcagatgacctcaat 430

                                                                       
Query: 301 gttagaaaatggaaagtcctgaaatcttgcttcatgactatctgggaagaaaaatgtagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 429 gttagaaaatggaaagtcctgaaatcttgcttcatgactatctgggaagaaaaatgtaga 370

                                                                       
Query: 361 gcaacatgggatattttatgcatcattaaaataagaataagcttcctaatcatgctatcc 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtaacatgggatattttatgcatcattaaaataagaataagcttcctaatcatgctatcc 310

                                                                       
Query: 421 tgtaatgtagccttggatgttaatggaggtacagagagaccagaactcattgtgtaacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgtaatgtagccttggatgttaatggaggtacagagagaccagaactcattgtgtaacaa 250

                                                            
Query: 481 ctaggctaccctggcattcattgtataatagtggcccacctgcttcaca 529
           |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 249 ctaggctaccctggtattcattgtataatagtggcccacctgcttcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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