BAC Information

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BAC

Clone NameMSMg01-337A07
Chromosome4 (Build37)
Map Location 22,594,635 - 22,594,801
singlet/doubletsinglet
Overlap genenone
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911
Downstream gene1700025O08Rik, LOC625462, LOC383998, LOC100040464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337A07.T7 (MSMg01no337_a07.b1)MSMg01-337A07.TJ (MSMg01no337_a07.g1)
ACCAG451898AG451899
length762868
length of high quality
(start - end)		573 (46 - 618)221 (75 - 295)
definitionCHROMAT_FILE: MSMg01no337_a07.b1 PHD_FILE: MSMg01no337_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:15 2005CHROMAT_FILE: MSMg01no337_a07.g1 PHD_FILE: MSMg01no337_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGTTTATCTCTGTCTGGTTTTTGTTCAGTCTCTGAGAGCCCAC
TAGAGTCTTGGTTAGTTGTCTCTGTTGGTCTTCTTATGGAGTTCCTATCC
TCTTTGAGGCTCTTAAGCCTTCCCCTAGCTCTTCCATAAGAGTACCCGAG
TTTTGTCCAACATTTGGCTGTGGGTCTGTATGTCTGTTTCAGTCAGCTGC
TGGGTGGAGGTTCTCAGAGGCCAGTTAGGTAGGCTAATATCTGTAAGCAT
AACAGAGTATCATTAATAGTGTCAGAAACTGGTCTTTGCCCATGGGATGG
ATATCATGGGTCAGTTATTAATTGGCCTTACCCTCAGTCTCTGATTCATC
TTTGTCCCTGCATTGCTTGCAGATAGGAAAAATTTGGGGTCGAAAGTTTT
GTGGGTAAGTTGGTATCCTTTTCATCCACTGGGGAATCCTGTCTGGCTAC
AGGAGGTGGCTTCTTCAGGTTCTATATCCCCACTGCTCAGAATATTAGCT
AAAGTCACTCTCACAGACTCCTGGGAACCTCCCCAATCCCAGGTCTCTAT
AGATGCCTACAAACCCCAAACCCACAAGTTGCCAATTTCCATTCATTCCC
CTTTGTCCCTCTCTCCTGTCGCTCCCTACACCTGATCCTTACCACCCCTC
ANTGGCTTCCTTATTCCCTCTCCTACACAAATTTCCACCCAAGACTCCCT
ATAGCAGTTTAT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGAAAAAAATATGTATATGTCACA
AATTTTCCTGTTGGATGAATGCTCTGATGTGGCAAAAGCACTTTACAAAA
GAGCTGCTCAGGGGAGGGGAAGGGAAAGGGAAGCCGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCG
CGAGCCNACCACGGCGCCACTCTAGTTTTCTTCTCTCTTCCTCTCTCTCC
CTGCGTTCTCCCCTATATTTTGTTTCCCTCTTTTGTCCTCTTTTTGCTGT
TTCCTTTTACCTTTCTTTCTTCTTCCTTTTTTCCCTCCCCCCCCCTCTTC
TCTTTCTCTTCCTTTCCCTTCCTATATTTTTGTTCTTTTATTCTTACTTT
TTTCTTCTTCCCATTTTCCCTGTATGTCTCGCTCGTCCCCCCCTCTTCTT
TCCTTTCCCCTTGTTTTTCTTTTNTTCTGTTCCGATTTCTCCTCCCTTTT
CCTCGCCTTACTCTCTCTTTCTCCTTTGTTCTCTCTTATTTGCCCCTATT
CCTCTTCTCTAGCATCTCTTGTTTTTTTTCCCTTCTACCTTCTCCTTCTT
TCCCTCTTTCTCTTATCACTCCATCTTCTCTTTCCTCCATCTTCTTTTCT
TCCTCTTCTCTTCCTTTCTCTCTCCTCTCTCTTCCATCCCCTCTTTCTCT
TCTCCCCCCTCTTTCCCTCTCCCTCTTACTTCTCTTCTCTCACTCTCCTC
TTCGTTCTCTCTCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_a07.g1 MSMg01no337_a07.g1 CHROMAT_FILE:
MSMg01no337_a07.g1 PHD_FILE: MSMg01no337_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:15 2005
         (221 letters)



>mm_chr4_22594435_22595055
          Length = 621

 Score =  300 bits (155), Expect = 5e-86
 Identities = 164/167 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaaaaaaatatgtatatgtcacaaattttcctgttggatgaatgctctgatgtggca 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaaaaaaatatgtatatatcacaaattttcctgttggatgaatgctctgatgtggca 260

                                                                       
Query: 61  aaagcactttacaaaagagctgctcaggggaggggaagggaaagggaagccgagagagag 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aaagtactttacaaaagagctgctcaggggaggggaagggaaagggaagcctagagagag 320

                                                          
Query: 121 agagagagagagagagagagagagagagagagagagagagagagaga 167
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagagagagagagagagagagagagagagagagagagagagagaga 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 160
Number of extensions: 55
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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