NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTTTTGTACAAGCAATGTTCATTAAGAATAAAAGCCATAACAA
GTTAATAGGCAGCTTTAGAAATCTTTCTAAAAGCCCAATTGAATGTAGTA
CAGGTATCAGTGCTGAGCAAGGGAGAAAGACAAGATGTTCCTATTAGTGT
TGGTTGGTGGCGTCTTTTTATACAAAGAAATGTTGTTTGCAATTCTGCTT
GGGAGACTAATTTAGAGTAATTTTTATTTTGTATACTTTATGAGTTAATG
GGATCTAGGAGTATAATAACCTGGTGAGAACTTCTCTGCGAATGGCAACG
AAATTAGTCTTATTCATGAAACTCATAAATAAGCTATAATTCAGCATTTT
ATGTCAAGGGAAAATAAAACCAGGGTCATGCTGTTTAAGAGGATAAGGGA
ATTAAACAGAGCACTGGGGGATCCATAGCAGATTTATGATGAAGATGAAT
TCTAACTGGAAGCTTAATTGTGATTTAAATTACAGGTCAAGCTGTGCAAT
GTGTTTGCTGTTTANGGGAACATCTTTGGGGAGAGAGAGCCTGCTTGGTT
AAAGAGGAAGCAGGAAGCAAATGAGAAAACAGATTGCAGTTTCTGCGTTC
CCTTTGAAATTTCAAGCTGCTCCTAGTCAAATTGCCCCTGAGTTNCTAAT
GACAGCTCCTTGGAAGGATGCCTCCTTTCCCTGTGTTTTTTCCGAA

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTANCACATTTCAAAAGAAACTCACACATAAGTATTCCCTGATAA
GTGGAAATTANCCCCCAACCTAGGATACCCAAGAAATTAAAAATAATTTG
TTAACACCCTGGAACCCCCCAAGAAAGAAGAACGGAAGGGGGACCCCATG

Query= MSMg01no337_f08.b1 MSMg01no337_f08.b1 CHROMAT_FILE:
MSMg01no337_f08.b1 PHD_FILE: MSMg01no337_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:41 2005
         (565 letters)



>mm_chr4_52436430_52437394
          Length = 965

 Score = 1064 bits (550), Expect = 0.0
 Identities = 558/561 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttttgtacaagcaatgttcattaagaataaaagccataacaagttaataggc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 gaattcttttttgtaaaagcaatgttcattaagaataaaagccataacaagttaataggc 706

                                                                       
Query: 65  agctttagaaatctttctaaaagcccaattgaatgtagtacaggtatcagtgctgagcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 agctttagaaatctttctaaaagcccaattgaatgtagtacaggtatcagtgctgagcaa 646

                                                                       
Query: 125 gggagaaagacaagatgttcctattagtgttggttggtggcgtctttttatacaaagaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gggagaaagacaagatgttcctattagtgttggttggtggcgtctttttatacaaagaaa 586

                                                                       
Query: 185 tgttgtttgcaattctgcttgggagactaatttagagtaatttttattttgtatacttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 585 tgttgtttgcaattctgcttgggagactaatttagagtaatttttattttgtatatttta 526

                                                                       
Query: 245 tgagttaatgggatctaggagtataataacctggtgagaacttctctgcgaatggcaacg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgagttaatgggatctaggagtataataacctggtgagaacttctctgcgaatggcaacg 466

                                                                       
Query: 305 aaattagtcttattcatgaaactcataaataagctataattcagcattttatgtcaaggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aaattagtcttattcatgaaactcataaataagctataattcagcattttatgtcaaggg 406

                                                                       
Query: 365 aaaataaaaccagggtcatgctgtttaagaggataagggaattaaacagagcactggggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aaaataaaaccagggtcatgctgtttaagaggataagggaattaaacagagcactggggg 346

                                                                       
Query: 425 atccatagcagatttatgatgaagatgaattctaactggaagcttaattgtgatttaaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atccatagcagatttatgatgaagatgaattctaactggaagcttaattgtgatttaaat 286

                                                                       
Query: 485 tacaggtcaagctgtgcaatgtgtttgctgtttangggaacatctttggggagagagagc 544
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 285 tacaggtcaagctgtgcaatgtgtttgctgtttaggggaacatctttggggagagagagc 226

                                
Query: 545 ctgcttggttaaagaggaagc 565
           |||||||||||||||||||||
Sbjct: 225 ctgcttggttaaagaggaagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)