Query= MSMg01no337_m05.b1 MSMg01no337_m05.b1 CHROMAT_FILE:
MSMg01no337_m05.b1 PHD_FILE: MSMg01no337_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:14 2005
(537 letters)
>mm_chr4_76880515_76881452
Length = 938
Score = 806 bits (417), Expect = 0.0
Identities = 456/479 (95%), Gaps = 19/479 (3%)
Strand = Plus / Minus
Query: 5 gaattctcaacattccacaaagtaaagtgggaagaattgtcgattatccattcaagaata 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaattctcaacattccaaaaagtaaagtgggaagaattgtcgattatccattcaagaata 681
Query: 65 tcatcctcccagcagttgggaggaagaggcaggtggattctgagttcaaggccagcctgg 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcatcctcccagcacttgggaggaagaggcaggtggattctgagttcaaggccagcctgg 621
Query: 125 tctacccattgagttccaggacatccagggccacacagagaaactctgtcttgaaaaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctacccattgagttccaggacatccagggccacacagagaaactctgtcttgaaaaaaa 561
Query: 185 acaaaagaaaacaaaa-aaaaaagaggatattatcccaatgacttttatttgaagaggta 243
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 560 -caaaagaaaacaaaacaaaaaagaggatattatcccaatgaattttatttgaagaggta 502
Query: 244 agtaagtatctgactacaaagtttccatcaattttagatatgattctaacttaaggacaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtaagtatctgactacaaagtttccatcaattttagatatgattctaacttaaggacaa 442
Query: 304 actggagactgaccctttattatcacatatgtatcaatccatagccctgccactcatcct 363
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 actggagactgaccctttattatcacatatgtatcaatccatagccctgcc-------ct 389
Query: 364 gttatgtgtgtacaaaccacttaagagtctatataaaata----------ttggctctaa 413
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 388 gttatgtgtgtacaaaccacttaagagtctatataaaataaaataaaatattggctctaa 329
Query: 414 tgtagcaagcctgggacaagcctgggattcccactttggagccagtctataagccaaag 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cgtagcaagcctgggacaagcctgggattcccactttggagccagtctataagccaaag 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 938
Length adjustment: 10
Effective length of query: 527
Effective length of database: 928
Effective search space: 489056
Effective search space used: 489056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_m05.g1 MSMg01no337_m05.g1 CHROMAT_FILE:
MSMg01no337_m05.g1 PHD_FILE: MSMg01no337_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:14 2005
(490 letters)
>mm_chr4_76752688_76753578
Length = 891
Score = 903 bits (467), Expect = 0.0
Identities = 485/491 (98%), Gaps = 1/491 (0%)
Strand = Plus / Plus
Query: 1 tttgaaggaaaaccatgaattatactcagaggataaaaaccttacacatatttatctatt 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tttgaaggaaaaccatgaattatactcagaggataaaaaacttacacatatttatctatt 260
Query: 61 taatacttgaagagtggattgagacaatcatatataagagaaaacattatttctattatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatacttgaagagtggattgagacaatcatatataagagaaaacattatttctattatt 320
Query: 121 tcagacatctcagtcatggagataaaatcatagtaacattagaa-ggccagggttaacca 179
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 321 tcagacatctcagtcatggagataaaatcatagtgacattagaaaggccagggttaacca 380
Query: 180 tttctaacaactaccagttttctaccggggatcagcaatcaaatttttcctggaggacat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctaacaactaccagttttctaccggggatcagcaatcaaatttttcctggaggacat 440
Query: 240 cacaggccctgtctatttctcccacgaatgtttcgagaatatggtgtacagtctggagta 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 cacaggccctgtctatttctcccatgaatgtttcgagaatatggtgtacagtctggagta 500
Query: 300 gaagtgtgacctattagtaaccctggttaggccagcagcttttgacacatttggaagcaa 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagtttgacctattagtaaccctggttaggccagcagcttttgacacatttggaagcaa 560
Query: 360 ctcttggtagagtctgtatggagctggagctgactcctcgttctgcttgcatttcactgt 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 ctcttggtagagtctgtatggagctggagctgcctcctcgttctgcttgcatttcactgt 620
Query: 420 aaatttaacaagagaagctgctaagaacttattgaactcatgatcactcttattcaaata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatttaacaagagaagctgctaagaacttattgaactcatgatcactcttattcaaata 680
Query: 480 gacccaacagt 490
|||||||||||
Sbjct: 681 gacccaacagt 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 891
Length adjustment: 10
Effective length of query: 480
Effective length of database: 881
Effective search space: 422880
Effective search space used: 422880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
