Query= MSMg01no337_m11.b1 MSMg01no337_m11.b1 CHROMAT_FILE:
MSMg01no337_m11.b1 PHD_FILE: MSMg01no337_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:15 2005
(504 letters)
>mm_chr4_120226308_120227212
Length = 905
Score = 878 bits (454), Expect = 0.0
Identities = 477/490 (97%), Gaps = 11/490 (2%)
Strand = Plus / Plus
Query: 21 caattgcatgtgaggaggcaaacctgtctgccatctctttccatttcatcagcatctttc 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 caattgcatgtgaggaggcaaacctgtctgccatctctttccatttcatcagcatctttc 280
Query: 81 gtgactgtctctcaataggaaggtcaagtctccgaagaaagtagtctacaaccccttgct 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtgactgtctctcaataggaaggtcaagtctccgaagaaagtagtctacaaccccttgct 340
Query: 141 cttctaacaacaagggtacccggtagatggatgaaacatcatgaacacagatcacctgtc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cttctaacaacaagggtacccggtagatggatgaaacatcatgaacacagatcacctgtc 400
Query: 201 atttaaaaaaaaaaaaa--gtgatttaataggtgcttaaataaaacaagtaactttggtt 258
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 401 atttaaaaaaaaaaaaaaagtgatttaataggtgcttaaataaagcaagtaactttggtt 460
Query: 259 atatctatatgaccttg----ttttttggagtgacactttaatttggaacaaaaaaggta 314
||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 461 atatctatatgaccttgggggt-----ggagtgacactttaatttggaacaaaaaaggta 515
Query: 315 attttctagaaaaagataaacttccgaaactgattcaagaatagaaaataattagtggct 374
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 516 attttctagaaaaagataaacttctgaaactgattcaagaatagaaaataattagtggct 575
Query: 375 aggccattatgaatatgaatgcaaaaatccttataagagagccagatgggatggtacatg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aggccattatgaatatgaatgcaaaaatccttataagagagccagatgggatggtacatg 635
Query: 435 cctgtaattcctgcacccaggagtctagacttaggctatctcataatacaaaaatgaaag 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cctgtaattcctgcacccaggagtctagacttaggctatctcataatacaaaaatgaaag 695
Query: 495 tatacccaca 504
||||||||||
Sbjct: 696 tatacccaca 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 905
Length adjustment: 10
Effective length of query: 494
Effective length of database: 895
Effective search space: 442130
Effective search space used: 442130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_m11.g1 MSMg01no337_m11.g1 CHROMAT_FILE:
MSMg01no337_m11.g1 PHD_FILE: MSMg01no337_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:15 2005
(280 letters)
>mm_chr4_120421406_120422085
Length = 680
Score = 518 bits (268), Expect = e-151
Identities = 277/280 (98%)
Strand = Plus / Minus
Query: 1 aagttccgtttcagctaagatcaaagcctcaaaagaccccagcagccactttccgttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aagttccgtttcagctaagatcaaagcctcaaaagaccccagcagccactttccgttgtg 421
Query: 61 taatttgaattcttgacttgagtcccatccctgggcctctgattgagaacttgcagttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 taatttgaattcttgacttgagtcccatccctgggcctctgattgagaacttgcagttta 361
Query: 121 ccagtcaggagagacaatgccatatatggggtgggggatatacgggcttcagcttatagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ccagtcaggagagacaatgccatatatggggtgggggatatacgggcttcagcttatagg 301
Query: 181 gagaagatagctatatctagccctggcacttgcaaccatagtgcgcaccccccccccgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gagaagatagctatatctagccctggcacttgcaaccatagtgcgcaccccccccccgcc 241
Query: 241 ccctattttagaaaccttcagttctcagtaggtcagggca 280
||| | | ||||||||||||||||||||||||||||||||
Sbjct: 240 cccaagtctagaaaccttcagttctcagtaggtcagggca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
