BAC Information

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BAC

Clone NameMSMg01-338F22
Chromosome4 (Build37)
Map Location 93,624,890 - 93,807,183
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338F22.T7 (MSMg01no338_f22.b1)MSMg01-338F22.TJ (MSMg01no338_f22.g1)
ACCAG452916AG452917
length757731
length of high quality
(start - end)		594 (39 - 632)585 (73 - 657)
definitionCHROMAT_FILE: MSMg01no338_f22.b1 PHD_FILE: MSMg01no338_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:59 2005CHROMAT_FILE: MSMg01no338_f22.g1 PHD_FILE: MSMg01no338_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,806,594 - 93,807,183)(93,624,890 - 93,625,474)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
ATGCTATTTCTTATTAAATTGCATTGTACATTTTATGAGCTAGGCTTTGT
GCCAAGTGCTTGCATTATTAAATAATAACTGTTTTTAGACACTCTTACTC
TTTTCATTTTGTTTGTGAGGAAACTAAGGCACAGGGCAATTGAACAACCT
ACATAAGCTATCTACCTGGAAGAACTACGCCATCTTATTCTAGAGACCAC
ACAGTTGACTGCTACACATACTTTGTTCCCTTATTTGAGTGTGACCAGGT
TAATATCAATAAACCCATCAATACTTTAGCATCTTTCTCCATAAAATGAG
GTAATGTAAAGCTTAGTAAGTTCCTACTCATGTGCAGGTTAGCTATGATG
TCATTTGTTGGACACTGGGTGTGAGGGAAAGAGGGAGTGGGAGAAAACCC
TTGTCTAGCTAGTGTTCCAGTACTCTGGGCAGGTGGATGCAGGAGGACTG
CTGCATGCTTTCCACATGGCTCTGGGAGGGTGTCTGTCTGTGGGAAAGTC
ACTGGACCCCAGCTTGGTGGGGGATGGAGGTACCAGGTTCTCAGTTTCAT
GGATCCCAGACACTCCTGAACACTGTGGAAGAGCTGAGAACAAATGCCCC
CCCCACCCCCCGGTGGCGCTCAGTCAGCCCTGGGAGGATTGGGAGGAGAG
GNTTTGTTGGATGGTTCCTATGCTGATGAGAGCCCTTGGTCTTGACCCGC
GGCTGAN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTTAAAAAAAGATTTATTCCAGACAT
TAAAGCAGACACATAAGTCAAGTCATTTGCTAAATGAATATTAAATCACC
CACTACTTTTTATTTATACAAGATAGATTCATTTGGTGGCTGCCTGGATG
AGCCATTTTTCTGGTGCTAGTAACTGAACTCTAACTAATTTTGAGATCCA
ACAAACCCTATCAAATAAATATGCAGTCATGTTATATTTGTGTTTAAGTT
ATATGCAGGCATATGCATGCTTACACACAAATATACATGTGAAGGTCAGA
GGCTGATGTTATCCATATTCCTCTCTGATTCTTCACCATACCTTTTTACA
CAGTCTCTCACTTGAACCTGAGCTTGTGGTTTCATAGACTGAATTGCCAG
CAAGTCTCCAGAATTACTTTGTCTCTCCTACCACCAATCCCGGGTTTACA
CACATGACTCACGCCCAGCTTTTCCATGGACACTGGGATTCCAACTCAGC
TCATTATGCTTACACATGTACACATGCGCATGCACTCATAAACACACACA
AAAATCAAAAATACTTTATAACCTGAACCATCTCTCCAGCCCTTGAGTTA
TCTCTTANAATGCAAAACATATTCTTTGGCACAGATATTGGACTATATTT
TTAGTACCTATAATATACAAATATGGTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_f22.b1 MSMg01no338_f22.b1 CHROMAT_FILE:
MSMg01no338_f22.b1 PHD_FILE: MSMg01no338_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:59 2005
         (594 letters)



>mm_chr4_93806452_93807445
          Length = 994

 Score = 1125 bits (582), Expect = 0.0
 Identities = 588/590 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatatgctatttcttattaaattgcattgtacattttatgagctaggctttgtgc 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gaattcatatgctacttgttattaaattgcattgtacattttatgagctaggctttgtgc 673

                                                                       
Query: 65  caagtgcttgcattattaaataataactgtttttagacactcttactcttttcattttgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 caagtgcttgcattattaaataataactgtttttagacactcttactcttttcattttgt 613

                                                                       
Query: 125 ttgtgaggaaactaaggcacagggcaattgaacaacctacataagctatctacctggaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttgtgaggaaactaaggcacagggcaattgaacaacctacataagctatctacctggaag 553

                                                                       
Query: 185 aactacgccatcttattctagagaccacacagttgactgctacacatactttgttccctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aactacgccatcttattctagagaccacacagttgactgctacacatactttgttccctt 493

                                                                       
Query: 245 atttgagtgtgaccaggttaatatcaataaacccatcaatactttagcatctttctccat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atttgagtgtgaccaggttaatatcaataaacccatcaatactttagcatctttctccat 433

                                                                       
Query: 305 aaaatgaggtaatgtaaagcttagtaagttcctactcatgtgcaggttagctatgatgtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaaatgaggtaatgtaaagcttagtaagttcctactcatgtgcaggttagctatgatgtc 373

                                                                       
Query: 365 atttgttggacactgggtgtgagggaaagagggagtgggagaaaacccttgtctagctag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atttgttggacactgggtgtgagggaaagagggagtgggagaaaacccttgtctagctag 313

                                                                       
Query: 425 tgttccagtactctgggcaggtggatgcaggaggactgctgcatgctttccacatggctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgttccagtactctgggcaggtggatgcaggaggactgctgcatgctttccacatggctc 253

                                                                       
Query: 485 tgggagggtgtctgtctgtgggaaagtcactggaccccagcttggtgggggatggaggta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgggagggtgtctgtctgtgggaaagtcactggaccccagcttggtgggggatggaggta 193

                                                             
Query: 545 ccaggttctcagtttcatggatcccagacactcctgaacactgtggaaga 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ccaggttctcagtttcatggatcccagacactcctgaacactgtggaaga 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no338_f22.g1 MSMg01no338_f22.g1 CHROMAT_FILE:
MSMg01no338_f22.g1 PHD_FILE: MSMg01no338_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:59 2005
         (585 letters)



>mm_chr4_93624690_93625674
          Length = 985

 Score = 1123 bits (581), Expect = 0.0
 Identities = 584/585 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttaaaaaaagatttattccagacattaaagcagacacataagtcaagtcatttgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttaaaaaaagatttattccagacattaaagcagacacataagtcaagtcatttgcta 260

                                                                       
Query: 61  aatgaatattaaatcacccactactttttatttatacaagatagattcatttggtggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgaatattaaatcacccactactttttatttatacaagatagattcatttggtggctg 320

                                                                       
Query: 121 cctggatgagccatttttctggtgctagtaactgaactctaactaattttgagatccaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctggatgagccatttttctggtgctagtaactgaactctaactaattttgagatccaac 380

                                                                       
Query: 181 aaaccctatcaaataaatatgcagtcatgttatatttgtgtttaagttatatgcaggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaccctatcaaataaatatgcagtcatgttatatttgtgtttaagttatatgcaggcat 440

                                                                       
Query: 241 atgcatgcttacacacaaatatacatgtgaaggtcagaggctgatgttatccatattcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcatgcttacacacaaatatacatgtgaaggtcagaggctgatgttatccatattcct 500

                                                                       
Query: 301 ctctgattcttcaccatacctttttacacagtctctcacttgaacctgagcttgtggttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctgattcttcaccatacctttttacacagtctctcacttgaacctgagcttgtggttt 560

                                                                       
Query: 361 catagactgaattgccagcaagtctccagaattactttgtctctcctaccaccaatcccg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catagactgaattgccagcaagtctccagaattactttgtctctcctaccaccaatcccg 620

                                                                       
Query: 421 ggtttacacacatgactcacgcccagcttttccatggacactgggattccaactcagctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtttacacacatgactcacgcccagcttttccatggacactgggattccaactcagctc 680

                                                                       
Query: 481 attatgcttacacatgtacacatgcgcatgcactcataaacacacacaaaaatcaaaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 681 attatgcttacacatgtacacatgcgcatgcactcataaacacacacaaaaatcaaaaaa 740

                                                        
Query: 541 actttataacctgaaccatctctccagcccttgagttatctctta 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actttataacctgaaccatctctccagcccttgagttatctctta 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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