Query= MSMg01no339_m21.b1 MSMg01no339_m21.b1 CHROMAT_FILE:
MSMg01no339_m21.b1 PHD_FILE: MSMg01no339_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:44 2005
(219 letters)
>mm_chr4_76515820_76516444
Length = 625
Score = 344 bits (178), Expect = 2e-99
Identities = 208/218 (95%), Gaps = 6/218 (2%)
Strand = Plus / Plus
Query: 5 gaattcctagatattgtcataagactttcttaaaatatttatcataataagactatgcag 64
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcctagatattgtgataagactttcttaaaatatttatcataataagattatgcag 264
Query: 65 aaatcataatgcctctatacttactaggactgtggtatttgtaagagaaactggaaaaat 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatcataatgtctctatacttactaggactgtggtatttgtaagagaaactggaaaaat 324
Query: 125 tagatagctaggtcattaacatatttgatgc-caattatgaagacaggag-tcaaatatt 182
||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||
Sbjct: 325 tagatagctaggtcattaacatatttgatgcacagttatgaagacaggagctcaaatatt 384
Query: 183 ta-ccctcatataaa-gac-gatgtgcatgc-tctaaa 216
|| |||||||||||| ||| ||||||||||| ||||||
Sbjct: 385 tagccctcatataaaagacagatgtgcatgcatctaaa 422
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 625
Length adjustment: 9
Effective length of query: 210
Effective length of database: 616
Effective search space: 129360
Effective search space used: 129360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no339_m21.g1 MSMg01no339_m21.g1 CHROMAT_FILE:
MSMg01no339_m21.g1 PHD_FILE: MSMg01no339_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:44 2005
(283 letters)
>mm_chr4_76615929_76616615
Length = 687
Score = 493 bits (255), Expect = e-144
Identities = 278/287 (96%), Gaps = 4/287 (1%)
Strand = Plus / Minus
Query: 1 tctggcccttcaaggaaacacaagccacacaagtggaaattgagagcagaagctaagcat 60
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 487 tctggcccttcaaggacacacaagccacacaagtggaaactgagagcagaagctaagcat 428
Query: 61 caggattctgtatctg---aaaaaaaaagcctttagaaagaaatgacacaaagatataat 117
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 caggattctgtatctgaaaaaaaaaaaagcctttagaaagaaatgacacaaagatataat 368
Query: 118 tttcaaagaaacacacattgataattggaggatttaggg-ttttagtgttattttgatct 176
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 367 tttcaaagaaacacacattgataattggaggatttagggtttttagtgttattttgatct 308
Query: 177 attcccaagttaaagttgatctttctataaggaaatgtaaaaagttcttcataaggaagg 236
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 307 attcccaagttaaagttgatctttctataaggaaatgtaaaaatttcttcataaggaagg 248
Query: 237 aaaggaatgttggtagttttcccaggtcatcacctaaatttgaaaaa 283
|||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 247 aaaggaatgtaggtagttttcccaggttatcacctaaatttgaaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 687
Length adjustment: 9
Effective length of query: 274
Effective length of database: 678
Effective search space: 185772
Effective search space used: 185772
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
