Query= MSMg01no340_f24.b1 MSMg01no340_f24.b1 CHROMAT_FILE:
MSMg01no340_f24.b1 PHD_FILE: MSMg01no340_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:23 2005
(581 letters)
>mm_chr4_39924935_39925915
Length = 981
Score = 1071 bits (554), Expect = 0.0
Identities = 569/574 (99%)
Strand = Plus / Plus
Query: 8 gaattctgtaatcctatctgcagactatataaaattttattgctatgagattttagctat 67
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctgtaatcctatatgcagactatataaaattttattgctatgagattttagctat 267
Query: 68 cttatagtaatttaagcatagctgtaaagtttggtgtatggaagattataaattaaatgt 127
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tttatagtaattcaagcatagctgtaaagtttggtgtatggaagattataaattaaatgt 327
Query: 128 ggttaaaagcaactaagtgattaagctttactcattatagtgtaatgatgaaggcagtaa 187
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 328 ggtttaaagcaactaagtgattaagctttactcattatagtgtaatgatgaagacagtaa 387
Query: 188 ataataagcagtttaattatgtttctgacacacatgacatgtcacttatgcatcataatt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ataataagcagtttaattatgtttctgacacacatgacatgtcacttatgcatcataatt 447
Query: 248 attatttggtttagagtctttagtctaccttttgttgaaagtggttggaaggatcatttg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 attatttggtttagagtctttagtctaccttttgttgaaagtggttggaaggatcatttg 507
Query: 308 gatctaatgcatttttattaaagaacaagcattcctttccctagaattggaaggagttta 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gatctaatgcatttttattaaagaacaagcattcctttccctagaattggaaggagttta 567
Query: 368 tttacatgtattacatttcagtaaagacatgagaggaaatgatattagtgaaggaatgag 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tttacatgtattacatttcagtaaagacatgagaggaaatgatattagtgaaggaatgag 627
Query: 428 ttcataggacatcaaatgcaaactgactactgtccagaagaagatgatcaagaagagagc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttcataggacatcaaatgcaaactgactactgtccagaagaagatgatcaagaagagagc 687
Query: 488 accattttcaaaagaaaaacctctgttgtgagactctgacctctgagcataatgaccatt 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 accattttcaaaagaaaaacctctgttgtgagactctgacctctgagcataatgaccatt 747
Query: 548 accacattaatcagagtatctgtggttacccaca 581
||||||||||||||||||||||||||||||||||
Sbjct: 748 accacattaatcagagtatctgtggttacccaca 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_f24.g1 MSMg01no340_f24.g1 CHROMAT_FILE:
MSMg01no340_f24.g1 PHD_FILE: MSMg01no340_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:23 2005
(532 letters)
>mm_chr4_40127752_40128687
Length = 936
Score = 940 bits (486), Expect = 0.0
Identities = 522/536 (97%), Gaps = 4/536 (0%)
Strand = Plus / Minus
Query: 1 actgttattatagaggaacgtcttgtggtcattgtgacggtctggagcaacttggaaacc 60
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 736 actgttactatagaggaacgtcttgcggtcattgtgacggtctggagcaacttggaaacc 677
Query: 61 tttaaatccttgctgtgggaagggaaggttgaaaatattgcacgtagtaagaaagaaata 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 676 tttaaatccttgctgtgggaagggaaagttgaaaatattgcacgtagtaagaaagaaata 617
Query: 121 ggacacacacagtctgctataaagagaaaaatatatatgaccagaacttctcactctgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggacacacacagtctgctataaagagaaaaatatatatgaccagaacttctcactctgga 557
Query: 181 agaactttggtaataattttaagtgccaactgttaacagaacaaacacttctatgagtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agaactttggtaataattttaagtgccaactgttaacagaacaaacacttctatgagtag 497
Query: 241 actttgaaatagcccagaaaatttcactttttaaaaattcacgaaggcagttgtgagtcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 actttgaaatagcccagaaaatttcactttttaaaaattcacgaaggcagttgtgagtcc 437
Query: 301 tgaatcttgctcagcaatgaagttaataccaattgctttcttccctcctc----aagact 356
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 436 tgaatcttgctcagcaatgaagttaataccaattgctttcttccctcctccagtaagact 377
Query: 357 cggagattaaatctatacacagttcgaagttagcctgcaaagagccctgattcattagtg 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aggagattaaatctatacacagttcgaagttagcctgcaaagagccctgattcattagtg 317
Query: 417 tgcagttcagtgggtgtggcctgagcctacggattctgaccacatggaaatttggaggtg 476
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 316 tgcagttcagtgggtatggcctgagcctactgattctgaccacatggaaatttggaggtg 257
Query: 477 atatttactaatatcactgtcaattactctcatcagtaatgtaaggcacagctgaa 532
|||||| ||| | ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 256 atatttgctactgtcactgtcaattactctcaccagtaatgtaaggcacagctgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 936
Length adjustment: 10
Effective length of query: 522
Effective length of database: 926
Effective search space: 483372
Effective search space used: 483372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
