Query= MSMg01no341_c11.b1 MSMg01no341_c11.b1 CHROMAT_FILE:
MSMg01no341_c11.b1 PHD_FILE: MSMg01no341_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:19 2005
(231 letters)
>mm_chr4_128459377_128460007
Length = 631
Score = 422 bits (218), Expect = e-122
Identities = 227/230 (98%)
Strand = Plus / Minus
Query: 1 tcaaacccaaggccttgggcaagcatctatcactaagccgcatgtgcgcacatgcgtggg 60
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 316 tcaaacccaaggccttgggcaagcatctaccactaagccacatgtgcgcacatgcgtggg 257
Query: 61 tgggtgggtgatgtatgtatctgtgtatacacatacgtggatacatccatgagcacgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgggtgggtgatgtatgtatctgtgtatacacatacgtggatacatccatgagcacgtgt 197
Query: 121 gcagaggccaggggaagagatctgggtctctcctgtcactggcagccttactccttgaga 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 196 gcagaggccaggggaagagatctgggtctctcctgtcattggcagccttactccttgaga 137
Query: 181 caaggtctctggctgagcctggggtcacgctggcatccagccaggcccgg 230
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 caaggtctctggctgagcctggggtcacgctggcatccagccaggcccgg 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space: 138084
Effective search space used: 138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no341_c11.g1 MSMg01no341_c11.g1 CHROMAT_FILE:
MSMg01no341_c11.g1 PHD_FILE: MSMg01no341_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:19 2005
(456 letters)
>mm_chr4_128333392_128334247
Length = 856
Score = 837 bits (433), Expect = 0.0
Identities = 452/459 (98%), Gaps = 4/459 (0%)
Strand = Plus / Plus
Query: 1 caacctgtgagcttttgtgaacctcactcctggtctttgtcaccggagaaaaggttcaac 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 caacctgtgagcttttgtgaacctcgctcctggtctttgtcaccggagaaaaggttcaac 260
Query: 61 aagtggaagcagaaaggagtggtttcaacggctccaaggtagagagcctggccctgggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtggaagcagaaaggagtggtttcaacggctccaaggtagagagcctggccctgggca 320
Query: 121 caatgctcagcaaaaaaaaaaaaaaaa--tcaaaaatcaaaaaaaa-ggaaagaaaagaa 177
|||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 321 caatgctcagaaaaaaaaaaaaaaaaaaatcaaaaatcaaaaaaaaaggaaagaaaagaa 380
Query: 178 agggagagagggagggatcacagctagggaggttgcacatgcctgtaatcctaacacaag 237
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 agggagagagggagggatcacagccagggaggttgcacatgcctgtaatcctaacacaag 440
Query: 238 caactgaatgaggcaggagaatctcaagttccaagccagcctgggctacatatctcaagt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caactgaatgaggcaggagaatctcaagttccaagccagcctgggctacatatctcaagt 500
Query: 298 tccaagccagcctggactacatatagagttctaagtgagtctgaacaacatgtgagctcc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccaagccagcctggactacatatagagttctaagtgagtctgaacaacatgtgagctcc 560
Query: 358 aggcagattacaaatcatgcatacaggccagaacctgctgttaatggtgccagccgtgta 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggcagattacaaatcatgcatacaggccagaacctgctgttaatggtgccagccgtgta 620
Query: 418 cagccgcagtgagtctgacagcttcagctgtctttgtag 456
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 cagc-gcagtgagtctgacagcttcagctgtctttgtag 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
