BAC Information

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BAC

Clone NameMSMg01-341G07
Chromosome4 (Build37)
Map Location 38,127,255 - 38,127,650
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621458, LOC277771
Downstream geneLOC100039448, LOC665520, LOC100039487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341G07.T7 (MSMg01no341_g07.b1)MSMg01-341G07.TJ (MSMg01no341_g07.g1)
ACCAG455200AG455201
length757759
length of high quality
(start - end)
456 (65 - 520)396 (74 - 469)
definitionCHROMAT_FILE: MSMg01no341_g07.b1 PHD_FILE: MSMg01no341_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:38 2005CHROMAT_FILE: MSMg01no341_g07.g1 PHD_FILE: MSMg01no341_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGGCAGATCTCTAGAGCATAAATAAATTTTATGCCTCAGCCCAGCCTTT
CTTTTTCATATTAATAACAGGGAGTAGATGTAACCTCCCGCCACAGCCTG
AAAACAGGGTTGACTTGTCACTAGAAGATCACCTGGGGTGGAGCCTGCCT
CTCTGGATCACCCTATTATTCTGCCACTCCTGCTGCCGCTATCTGCCACC
TAGCTGTTCCAGAGCCTACACGTGGTCACCTGCAGCTGGACTCCAAGGAT
GATTTGGCGGGAATGTCCCCCTCCTTCTTTATAAGCCCGTGTTTCCTGAT
ATTAAAATTGAGCTTTGATCAGAATCTCTTGACTTAGCTCCATTCTTTCT
CTCGTATGTCTAGTTCCCTCTCTTTCAGCTCAAGTTTGCCTTTTCAGCCA
TACCCTGTTTGTTACGAGCCATTGTACGGTCCACAACAAGTGATACTCCA
TTGAATCTCCAATTATGTAAAGTAAAATGTGAGACGGTGACTGATTAAAT
CAACTGCATTATTGTAATATTTAATTCTTTGGGCACTGTGAATATTCCCA
TTTTTTTTATGCTAAAGTCTTTTACAATATAATTTTTTAATGTTTAAAAC
ACAACATCGCATATTTCCTCCTTTATTTTATTCTTTTTCTCTTTCCATAT
TATCCAATTATAATGCTTTTTTTTCATATATAAAACCTTTCTCTGTTTCC
ACCCCCC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTATACTAGAAGTGCAGCCTGGGAGAA
TCAGAAAGTTCTTGCCATTCACAAATGTGTTACTAGATTGAAGATTAATT
GCATCAGATCCTGTTCAATAAAAATGAGAAGAAAACTGAAGAACAAGCCA
AATTACGGGAGACTTAAATAGGATTGTTTATAGGAAAGTAAAGGACATTG
TTATGAGTAAGATAATTGATTTGGGATATATTGAAAAATAAGGAGAGGTT
AAAAAATAAAGTAAATATATTTTCTAGGTTGGGAAAGTTTGAGAGTAACA
GTTAAAGCAGTGGTTATCAACCTCCCTGCTGCTATGAACCATTAATAAAG
TTCTTCATATTTTGTTGACCTCCAACTTTAAAATTATTTTTGTTACTCCA
TTTTGCTACCTTATATCTGCAATTTTGTTACTTTTATCATTCCTAAAGTA
AATATCTTTGTTCTTGAGACAGTCTCTATACTATCCTGTGAAAGCCACTT
TTCTACCTCCAATGTCTTTTCATTTACCCCCTGTATACCCTTTGCTCTTT
TTACCCCCCCCATTTCGATCCTCCGAAACTCTTCATTTCCATATCCCCTT
ATCCTTCTTTTTCCCTTTTTCTTTTTTCCTCCCCTCTTTTTCCCCCCCTT
TCCCGTTCTTTTTTTTCCTTTCCTTCCCCTTCCCCATTAATTCTCTTACC
TTATCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_g07.g1 MSMg01no341_g07.g1 CHROMAT_FILE:
MSMg01no341_g07.g1 PHD_FILE: MSMg01no341_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:38 2005
         (396 letters)



>mm_chr4_38127167_38127962
          Length = 796

 Score =  743 bits (384), Expect = 0.0
 Identities = 393/396 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatactagaagtgcagcctgggagaatcagaaagttcttgccattcacaaatgtgttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctatactagaagtgcagcctgggagaatcagaaagttcttgccattcacaaatgtgttac 425

                                                                       
Query: 61  tagattgaagattaattgcatcagatcctgttcaataaaaatgagaagaaaactgaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tagattgaagattaattgcatcagatcctgttcaataaaaatgagaagaaaactgaagaa 365

                                                                       
Query: 121 caagccaaattacgggagacttaaataggattgtttataggaaagtaaaggacattgtta 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 364 caagccaaattacgggagacttaaataggattgtttataggaaagtgaaggacattgtta 305

                                                                       
Query: 181 tgagtaagataattgatttgggatatattgaaaaataaggagaggttaaaaaataaagta 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 304 tgagtaagataattgatttgggatatgttgaaaaataaggagaggttaaaaaataaagta 245

                                                                       
Query: 241 aatatattttctaggttgggaaagtttgagagtaacagttaaagcagtggttatcaacct 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aatatattttcaaggttgggaaagtttgagagtaacagttaaagcagtggttatcaacct 185

                                                                       
Query: 301 ccctgctgctatgaaccattaataaagttcttcatattttgttgacctccaactttaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ccctgctgctatgaaccattaataaagttcttcatattttgttgacctccaactttaaaa 125

                                               
Query: 361 ttatttttgttactccattttgctaccttatatctg 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 124 ttatttttgttactccattttgctaccttatatctg 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)