BAC Information

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BAC

Clone NameMSMg01-341G14
Chromosome4 (Build37)
Map Location 25,634,054 - 25,634,565
singlet/doubletsinglet
Overlap geneFut9
Upstream geneKlhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732
Downstream geneLOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341G14.T7 (MSMg01no341_g14.b1)MSMg01-341G14.TJ (MSMg01no341_g14.g1)
ACCAG455214AG455215
length745752
length of high quality
(start - end)
516 (41 - 556)393 (71 - 463)
definitionCHROMAT_FILE: MSMg01no341_g14.b1 PHD_FILE: MSMg01no341_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:39 2005CHROMAT_FILE: MSMg01no341_g14.g1 PHD_FILE: MSMg01no341_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTCTTATCCTTCCCCCTTTTCTTCTCCTTTTCTTATGTTCATGCTTTTC
GGCACTGCAATGTTTCAGAATTGCATTGCATGTTTCTTGTCCTGGTCAAC
AGTCAGCTATCACTTCCTGGAGGTTGAGGTAGGTTTTACAGTTGAAGCTC
AGACGTGGAGAGCAACTGTCACCACACAGTGTCATGGCTTCCAGGAACAT
TCCACAAATACAGCTAGTGTTATGACAGATAGCCATAGGTACTCATGGCT
ACACGCCCCTTGCTTTCCTATACCCAAATACTTCTGTATATTACTCCTTG
CTCTTTTTAAAATTGATAGCCTCTTAATTAGTTAGTTGTTCTTACATGAA
TATTTCAAAGCACCCATTTCTTTTTGTGAATAGCTTCTTCTCTTATGAAA
ACTTTGGTCCTTCTACCAGTGGTTCATTTACTCATATAGGTTATGCTATA
TAGATAAAAATGGTTTCAGAGCTGCTTACCTATACTTCATTGAGGGAAAA
ATATCCAATAGAAGTACTATATATCTGTTATTCCTTAGGCACTTAATCTT
ATTCTCTTCAGATTTGATTTGACAAAGTACTATTCTTTTCAAATATAAAA
CTGATGCCTTCTCTCTGCTACCTCAATCATATTCTACTTCTTAATTAATA
CCAAAAAGTGTCCGCTTTCCCTCTACCCGTGAGACACAATGGTGA
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGCTATGATCAGTACTCCATTTTCAATT
GGGTTATTTAGTATGATGATGTCCCGTTTTGTGAGTTCTTCATATATTTT
ACATATTAGTCCTGTATCAGATGTGGAGTTGGTAAAAATCTTTCCTCATT
GTGTAGGCTGCCTTTTTGTACTACTGATGATGTGTTATGCCTTACAAAGC
TTTTTAGTTTCATGAGGTCCCATTTATTAACTGTCTTCCTGCCTATGCTA
TCAGTGCTGTTTAGGAAGCTGTCTCTTGTGCCAATGTGTTCAAAGCTATT
CCCTACTTTTGCTTTTATTGGGTTCAGTGTATTTGTTTTTATGTTGAGGA
CTACGATGCACTTGGACTTCAAATTTGTATAAGGTAATAAGGAAATCTTT
GCATTCTTCTAAAAGCAACAACACAATTATACCAGCACCATTCGTTGAAA
AGGATTTCCTCTTTTTTTTTTTTAATTGTGTAATTCTGGCCTCTTTACCA
ACATCCCACCTCCTTAGGTGTGTGGGATTATATCTTGATTTTCCTCTTCC
CCCATTGTCCTAACTGTTCCCGCTTCCTTGCCTTACCCATTTTGTTTTTT
TTCTTCATCTTCCTCCTTCCCCTCTTCTTGCTTTTTCAAGCCCCTTCTTT
TTCGTTTCCGTTCTTCTCCTCTTTTTTTTATATTCTCCCCCTTTTTCCTT
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_g14.b1 MSMg01no341_g14.b1 CHROMAT_FILE:
MSMg01no341_g14.b1 PHD_FILE: MSMg01no341_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:39 2005
         (516 letters)



>mm_chr4_25633850_25634765
          Length = 916

 Score =  982 bits (508), Expect = 0.0
 Identities = 511/512 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcttatccttcccccttttcttctccttttcttatgttcatgcttttcggca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcttatccttcccccttttcttctccttttcttatgttcatgcttttcggca 264

                                                                       
Query: 65  ctgcaatgtttcagaattgcattgcatgtttcttgtcctggtcaacagtcagctatcact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgcaatgtttcagaattgcattgcatgtttcttgtcctggtcaacagtcagctatcact 324

                                                                       
Query: 125 tcctggaggttgaggtaggttttacagttgaagctcagacgtggagagcaactgtcacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcctggaggttgaggtaggttttacagttgaagctcagacgtggagagcaactgtcacca 384

                                                                       
Query: 185 cacagtgtcatggcttccaggaacattccacaaatacagctagtgttatgacagatagcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacagtgtcatggcttccaggaacattccacaaatacagctagtgttatgacagatagcc 444

                                                                       
Query: 245 ataggtactcatggctacacgccccttgctttcctatacccaaatacttctgtatattac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataggtactcatggctacacgccccttgctttcctatacccaaatacttctgtatattac 504

                                                                       
Query: 305 tccttgctctttttaaaattgatagcctcttaattagttagttgttcttacatgaatatt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 tccttgctctttttaaaattgatagcctcttaattagttagttgttcttacatgcatatt 564

                                                                       
Query: 365 tcaaagcacccatttctttttgtgaatagcttcttctcttatgaaaactttggtccttct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcaaagcacccatttctttttgtgaatagcttcttctcttatgaaaactttggtccttct 624

                                                                       
Query: 425 accagtggttcatttactcatataggttatgctatatagataaaaatggtttcagagctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 accagtggttcatttactcatataggttatgctatatagataaaaatggtttcagagctg 684

                                           
Query: 485 cttacctatacttcattgagggaaaaatatcc 516
           ||||||||||||||||||||||||||||||||
Sbjct: 685 cttacctatacttcattgagggaaaaatatcc 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)