Query= MSMg01no341_h22.b1 MSMg01no341_h22.b1 CHROMAT_FILE:
MSMg01no341_h22.b1 PHD_FILE: MSMg01no341_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:46 2005
(267 letters)
>mm_chr4_68056844_68057509
Length = 666
Score = 422 bits (218), Expect = e-122
Identities = 233/238 (97%), Gaps = 2/238 (0%)
Strand = Plus / Plus
Query: 5 gaattctttcctctgacctaatttttttttgtgtctacttcaattgaaacaagttaaggc 64
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcctctgacctaatttttttt-gtgtctacttcaattgaaacaagttaaggc 263
Query: 65 tatctcctcacactctggtttgatacctccctcttctacatgggattccttaaaagtgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatctcctcacactctggtttgatacctccctcttctacatgggattccttaaaagtgca 323
Query: 125 attcaagatttatcttctttgttataaaagaaagaaagaaagaaagaaagaaagaaagaa 184
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 324 attcaagatttatcttctttgttatgaaagaaagaaggaaagaaagaaagaaagaaagaa 383
Query: 185 agaaagaaagaaagaaagaaggaa-ggaaggaaggaaggaaggaaggaaggaaggaag 241
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 384 agaaagaaagaaagaaagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaag 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 666
Length adjustment: 9
Effective length of query: 258
Effective length of database: 657
Effective search space: 169506
Effective search space used: 169506
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no341_h22.g1 MSMg01no341_h22.g1 CHROMAT_FILE:
MSMg01no341_h22.g1 PHD_FILE: MSMg01no341_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:46 2005
(416 letters)
>mm_chr4_68238627_68239442
Length = 816
Score = 758 bits (392), Expect = 0.0
Identities = 410/416 (98%)
Strand = Plus / Minus
Query: 1 tctctatggagggtgagagcagaacatgtttttgggcatgaacaaaaatattgagaaggc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 506 tctctatggagggtgagagcagaacatgtttttgggcatgaagaaaaatattgagaaggc 447
Query: 61 atttttacagcatggttggtatgctcatgcttcattgtgtatgtgtgtgaaattcttaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atttttacagcatggttggtatgctcatgcttcattgtgtatgtgtgtgaaattcttaat 387
Query: 121 tatagagaaaattgatatgagaatgaaaaggtgtgcatgatctaaattacatctgaaaat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tatagagaaaattgatatgagaatgaaaaggtgtgcatgatctaaattacatctgaaaaa 327
Query: 181 tccataaactaatatcaattacagtcaatatatgaatagtaattgccaagtattagatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tccataaactaatatcaattacagtcaatatatgaatagtaattgccaagtattagatgt 267
Query: 241 cttacatattaatgcaacaaacctcacaaggaaatccagttattcttttaggaatgagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttacatattaatgcaacaaacctcacaaggaaatccagttattcttttaggaatgagtt 207
Query: 301 aaacaaacacacagaagagttgagtatttgcctgatgtcctgaggttaataaatgacagg 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aagcaaacacacagaagagttgagtatttgcctgatgtcctgaggttaataaatgacagg 147
Query: 361 attgggaattgaagtaagctgtctcacggacatcacagttgtaactactgtactgt 416
|||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||
Sbjct: 146 attgggaattgaagtaagctgtatcacagacatcacagttgtaactactgtgctgt 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space: 328449
Effective search space used: 328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
