Query= MSMg01no341_i01.b1 MSMg01no341_i01.b1 CHROMAT_FILE:
MSMg01no341_i01.b1 PHD_FILE: MSMg01no341_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:46 2005
(459 letters)
>mm_chr4_83034251_83035110
Length = 860
Score = 609 bits (315), Expect = e-178
Identities = 348/359 (96%), Gaps = 1/359 (0%)
Strand = Plus / Minus
Query: 4 ggaattctggtactatgccagaaattcctctgggttttcggtctgttccattgcctgtgg 63
||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 359 ggaattctggtactaggtcagaaattcctctaggttttcggtctgttccattgcctgtgg 300
Query: 64 gattcaaagactggaagggaacccaaggatcctagctctccctccctctctcccctttct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gattcaaagactggaagggaacccaaggatcctagctctccctccctctctcccctttct 240
Query: 124 ctaggcctgcttgagtcacac-ttttccccccctcctgagacagggtttctctgtgtagc 182
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 239 ctaggcctgcttgagtcacacttttttcccccctcctgagacagggtttctctgtgtagc 180
Query: 183 cctggctgtcccggaactcactctagaccaggctggcctcaaacttatgattaaataaag 242
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cctggctgtcctggaactcactctagaccaggctggcctcaaacttatgattaaataaag 120
Query: 243 tcaaccataggtcaagaggcagaacaagcaaccagttggcaggaagtgaacataggatta 302
|| |||||||||||||||||||| | |||||||||||||||| |||||||||||||||||
Sbjct: 119 tctaccataggtcaagaggcagagccagcaaccagttggcagaaagtgaacataggatta 60
Query: 303 ttaaggaaaaaacaaaacaaaacaaaacatacagaccagagagtaagagtgagtcagga 361
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 59 ttaaggaaaaaacaaaacaaaacaaaacatacaaaccagagagtaagagtgagtcagga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 860
Length adjustment: 10
Effective length of query: 449
Effective length of database: 850
Effective search space: 381650
Effective search space used: 381650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_i01.g1 MSMg01no341_i01.g1 CHROMAT_FILE:
MSMg01no341_i01.g1 PHD_FILE: MSMg01no341_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:46 2005
(391 letters)
>mm_chr4_82866088_82866873
Length = 786
Score = 687 bits (355), Expect = 0.0
Identities = 380/391 (97%), Gaps = 5/391 (1%)
Strand = Plus / Plus
Query: 1 tgaaaataatctggcaacttaaatatatatctaataacacagagccttctgtaagggaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaaataatctggcaacttaaatatatatctaataacacagagccttctgtaagggaca 260
Query: 61 aagaaaaggaaaacactgactttcaaattgatttatttccacttaaaaatacaatttata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaaaggaaaacactgactttcaaattgatttatttccacttaaaaatacaatttata 320
Query: 121 atatgacatctgttttcaaaactgtctcaatagtaaaaatagaaacaggacctgtcatct 180
||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | |||
Sbjct: 321 atacgacatctgttttcaaaactgtctcaatattaaaaatagaaacaggacctgccgtct 380
Query: 181 tcaggttgaaaattaaatctttatctgcggtcacttaaacatcacaggtgatcacattaa 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tcaggttgaaaattaaatctttatctgcggtcacttaaatatcacaggtgatcacattaa 440
Query: 241 cataaaatcagcatatgaaaagtcacgggaacacaacatttacatcaaaaatatttgcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataaaatcagcatatgaaaagtcacgggaacacaacatttacatcaaaaatatttgcac 500
Query: 301 ttttcttgttttttctagctggtctctttcctctctctaggaccagaccttaatccactt 360
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 ttttcttgttctttctagctggtctctttc-----tctaggaccagaccttaatccactt 555
Query: 361 attagcagacagatgttaataacacattcga 391
|||||||||||||||||||||||||||||||
Sbjct: 556 attagcagacagatgttaataacacattcga 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 786
Length adjustment: 9
Effective length of query: 382
Effective length of database: 777
Effective search space: 296814
Effective search space used: 296814
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
