Query= MSMg01no341_k10.b1 MSMg01no341_k10.b1 CHROMAT_FILE:
MSMg01no341_k10.b1 PHD_FILE: MSMg01no341_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:57 2005
(435 letters)
>mm_chr4_104013990_104014824
Length = 835
Score = 787 bits (407), Expect = 0.0
Identities = 425/431 (98%), Gaps = 1/431 (0%)
Strand = Plus / Plus
Query: 5 gaattcctgctctgccctgccctcccgcaatgacagagtgtgacctgagccttgtaagct 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 206 gaattcctgctctgccctgccctcccgcaatgacggagtgtgacctgagccttgtaagct 265
Query: 65 taaataagcccttttccctacattgcttttggtcacagtgttttaaccgccccccccagc 124
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 266 taaataagcccttttccctacattgcttttggtcacagtgttttaaccg-cccccccaac 324
Query: 125 cccccaaaatagaaacctcaactaagaagcacgggaactctgaaatgggaagagcagaac 184
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 cccccaaaatagaaacctcaactaaaaagcacgggaactctgaaatgggaagagcagaac 384
Query: 185 ccacagtcactatcaatcatctgaaagtcagaataagaaaagactggcagagccaaccaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccacagtcactatcaatcatctgaaagtcagaataagaaaagactggcagagccaaccaa 444
Query: 245 ctctcttgtgagcacctccaagcacatagtagggttgagagtcaggtacctggctgacag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctcttgtgagcacctccaagcacatagtagggttgagagtcaggtacctggctgacag 504
Query: 305 gctgagagatgagacatacttgatgtaagtccaggaacctgggagaagctgcccatagaa 364
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 gctgagagatgagacatacttgatataagtccaggaacctgggagaagctgcccatagaa 564
Query: 365 agatctagtgtcccgtagagctaaaataattatcttccaagagtcaccattctaaggttc 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggatctagtgtcccgtagagctaaaataattatcttccaagagtcaccattctaaggttc 624
Query: 425 atcaggaggtt 435
|||||||||||
Sbjct: 625 atcaggaggtt 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space: 351876
Effective search space used: 351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_k10.g1 MSMg01no341_k10.g1 CHROMAT_FILE:
MSMg01no341_k10.g1 PHD_FILE: MSMg01no341_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:58 2005
(427 letters)
>mm_chr4_104185423_104186250
Length = 828
Score = 741 bits (383), Expect = 0.0
Identities = 419/435 (96%), Gaps = 8/435 (1%)
Strand = Plus / Minus
Query: 1 aaatggacaatctttttacacaaagtttgttttgctatgtac-------catggttaagc 53
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 671 aaatggacaatctttttacacaaagtttgttttgctatgtaccatgtatcatggttaagc 612
Query: 54 atctaaaaatattccagtcacccaccctgaccaactatataaccgaataccactttattt 113
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 611 atctaaaaatattccagtcacacaccctgaccaactatataaccgaataccaccttattt 552
Query: 114 acttattttagtttttgttaagctagggatgtttattatggaaaacttgaaaaatataaa 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 acttattttagtttttgttaagctagggatgtttattatggaaaacttgaaaaatataaa 492
Query: 174 tgcaagagtgaaaataaaataaatgctttatctgtaaaatcagaggcatgcatgtttaat 233
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 491 tgcaagagtgaaaataaaataaatgctttatctgcaaaatcagaggcatgcatgtttaat 432
Query: 234 attcagagtattttgctctagcaataattttctctatatacacacatgagtttttctgct 293
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 431 atttagagtattttgctctagcaataattttctctatatacacacatgaatttttctgct 372
Query: 294 catcgtataagtactctgccaagtccttgatcactaaatgtggaaatgcaca-tttttct 352
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 371 catcttataagtactctgccaagtccttgatcactaaatgtggaaatgcacattttttct 312
Query: 353 ggaatataatactcacttgtccacaatatagagtagaaaaacccagggtctttttgaact 412
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 311 ggaatataatacttacttgtccacaatatagagtagaaaaacccagagtctttttgaact 252
Query: 413 gttgatccctaacaa 427
|||||||||||||||
Sbjct: 251 gttgatccctaacaa 237
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 828
Length adjustment: 9
Effective length of query: 418
Effective length of database: 819
Effective search space: 342342
Effective search space used: 342342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
