BAC Information

Click to search

BAC

Clone NameMSMg01-341L05
Chromosome4 (Build37)
Map Location 108,755,748 - 108,898,153
singlet/doubletdoublet
Overlap geneOsbpl9
Upstream geneScp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1
Downstream geneCalr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2, Elavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341L05.T7 (MSMg01no341_l05.b1)MSMg01-341L05.TJ (MSMg01no341_l05.g1)
ACCAG455432AG455433
length751763
length of high quality
(start - end)		446 (67 - 512)384 (75 - 458)
definitionCHROMAT_FILE: MSMg01no341_l05.b1 PHD_FILE: MSMg01no341_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:01 2005CHROMAT_FILE: MSMg01no341_l05.g1 PHD_FILE: MSMg01no341_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,755,748 - 108,756,193)(108,897,770 - 108,898,153)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAA
TTCATCAGCATCCTAGAACTCATCTTCACTGCTAGAGTAAGAGAACTCTG
GGACTGTATTTGGAGACAAGTTGACATGGCTGGGAGGAGTCAGACTGCTG
CTAGGTGGTGAGTTCCCACTGCCTACGAGTCAAAGGTTTTCAATTAGGGA
AAACGGTGGTAGTTAAGGAGATGGGCCCACAACAGACCTCTCTAAAGTCA
AGACCGAGTTTGGTCAACTGATGTAATTCTCACCTTATTTTTTAACCAAC
GGTTAAATCAGACAATGATAACAACAAAGGCAACTGTGATACAGACTGGG
GACACAGCCTTTTTTCTTTATTCATTTTATAGTACTGAACACTGATTCCA
GGGATTCACACATACTAAAAAAACATCCTCCCACTGAGCAGTAACACCCT
CAGTCTGGATATAATCTTTTAAACAAATGGGAAAAATTCTGTATCTCCAC
ACTGTGACTTAAGATCATCCTGCGTTCTGCACTATCAATGAGTCTTGATT
GTTTTCTTGTTGGCGTTTTCCCCCTTTTTTTTTTACCCCCTCTTTCGCTA
TTCTTCCCTTCTTTTTCCTTTTCCCCTACCTATCTCTCCTCTTTGTTTTT
GTTTTCCTTGTTCCGCTCCTTCTTTTTTCCGCTTTTCCCCCCCTTTTTTC
CTTCTTTTTTTTTTTTCCCTTTTTCCACTCTCCCGTTTTTTTACTTTCTT
A

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACACATCCAAGGCCCCACTCTTGC
CTCCTCACTCCTGCAGCCTCCAGAGCGATCCTCGCCAGCCGTTTGTACTT
GAGCTCTGGAAAGGCCAGCTGGACCAGGTCCCTTTGGTTCGGGCATCTGT
CCAGGGCGATTCTTCCCCGGGCTCAGCATGTCCAAGTGTCCCTGATTCAC
AGATGGTCTCAATTGCTTATCAGTCGGAGGCCTGAGCAGCAGGGTGTTCC
TCAGTCCTGCTGGGCTGTCCCCAGTGTGTCTATGCCAGCTGGGTACAAAG
GCCCTTTGTGTAAGAATGTCTCTCCAGCCAAGTTTTCATAGACAAGTCTG
AGAGCTAACAGAATTAACATTCACACGTGTACATACCTTGCGACTCCTGC
ATCATTCAGACCCTCATTGGAATTCCCGTTTCTTTCCCCCAGATTTTTAT
ATCTCCCTAATGGGGGTCGCTGTGCTTATTAACTTTCCCTCCTTATCCGT
CTTTGTTTGCCGTCCGAAGCTTTTCCCATTTTTTTTGTTTTAACTTCTCG
CCATTTTATCGCGCCCCCTTCCCCGTCTTATTTTTCGTATTTCTACCCTT
ATTTTTTTTTTCTTCTTCTACCCCTTCCTTTTTTCTTTCTTCTCCCCACT
CTTTTTTTTTTCTTTTTTTTCTCTTCCTTATTCCCCCCTTTTCCTTTCCT
TTTCCCTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_l05.b1 MSMg01no341_l05.b1 CHROMAT_FILE:
MSMg01no341_l05.b1 PHD_FILE: MSMg01no341_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:01 2005
         (446 letters)



>mm_chr4_108755548_108756393
          Length = 846

 Score =  808 bits (418), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactcatcttcactgctagagtaagagaactctgggactgtatttggagacaagttgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactcatcttcactgctagagtaagagaactctgggactgtatttggagacaagttgaca 260

                                                                       
Query: 61  tggctgggaggagtcagactgctgctaggtggtgagttcccactgcctacgagtcaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggctgggaggagtcagactgctgctaggtggtgagttcccactgcctacgagtcaaagg 320

                                                                       
Query: 121 ttttcaattagggaaaacggtggtagttaaggagatgggcccacaacagacctctctaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttcaattagggaaaacggtggtagttaaggagatgggcccacaacagacctctctaaa 380

                                                                       
Query: 181 gtcaagaccgagtttggtcaactgatgtaattctcaccttattttttaaccaacggttaa 240
           ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gtcaagaccaagtttggtcaactgatgtaattctcaccttattttttgaccaacggttaa 440

                                                                       
Query: 241 atcagacaatgataacaacaaaggcaactgtgatacagactggggacacagccttttttc 300
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcagacaatgaaaacaacaagggcaactgtgatacagactggggacacagccttttttc 500

                                                                       
Query: 301 tttattcattttatagtactgaacactgattccagggattcacacatactaaaaaaacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttattcattttatagtactgaacactgattccagggattcacacatactaaaaaaacat 560

                                                                       
Query: 361 cctcccactgagcagtaacaccctcagtctggatataatcttttaaacaaatgggaaaaa 420
           ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct: 561 cctcccactgagcagtaacacccacagcctggatataaccttttaaacaaatgggaaaaa 620

                                     
Query: 421 ttctgtatctccacactgtgacttaa 446
           ||||||||||||||||||||||||||
Sbjct: 621 ttctgtatctccacactgtgacttaa 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_l05.g1 MSMg01no341_l05.g1 CHROMAT_FILE:
MSMg01no341_l05.g1 PHD_FILE: MSMg01no341_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:01 2005
         (384 letters)



>mm_chr4_108897570_108898353
          Length = 784

 Score =  727 bits (376), Expect = 0.0
 Identities = 382/384 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacacatccaaggccccactcttgcctcctcactcctgcagcctccagagcgatcctcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tcacacatccaaggccccactcttgcctcctcactcctgcagcctccagagcgatcctcg 525

                                                                       
Query: 61  ccagccgtttgtacttgagctctggaaaggccagctggaccaggtccctttggttcgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ccagccgtttgtacttgagctctggaaaggccagctggaccaggtccctttggttcgggc 465

                                                                       
Query: 121 atctgtccagggcgattcttccccgggctcagcatgtccaagtgtccctgattcacagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 atctgtccagggcgattcttccccgggctcagcatgtccaagtgtccctgattcacagat 405

                                                                       
Query: 181 ggtctcaattgcttatcagtcggaggcctgagcagcagggtgttcctcagtcctgctggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ggtctcaattgcttatcagtcggaggcctgagcagcagggtgttcctcagtcctgctggg 345

                                                                       
Query: 241 ctgtccccagtgtgtctatgccagctgggtacaaaggccctttgtgtaagaatgtctctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctgtccccagtgtgtctatgccagctgggtacaaaggccctttgtgtaagaatgtctctc 285

                                                                       
Query: 301 cagccaagttttcatagacaagtctgagagctaacagaattaacattcacacgtgtacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 284 cagccaagttttcatagacaagtctgagagctaacagaattaacattcacacgcgtacat 225

                                   
Query: 361 accttgcgactcctgcatcattca 384
           |||||| |||||||||||||||||
Sbjct: 224 accttgtgactcctgcatcattca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |