Query= MSMg01no341_l24.b1 MSMg01no341_l24.b1 CHROMAT_FILE:
MSMg01no341_l24.b1 PHD_FILE: MSMg01no341_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:05 2005
(363 letters)
>mm_chr4_137545164_137545927
Length = 764
Score = 683 bits (353), Expect = 0.0
Identities = 359/361 (99%), Gaps = 1/361 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaggtttttgtc-caggttgctgtgggctctgggtatagcagacagccgcccaa 62
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggtttttgccacaggttgctgtgggctctgggtatagcagacagccgcccaa 263
Query: 63 agcgaccgcactcctcatgggcatgcgctgtgcgtgttctaggatattctggccctgctc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agcgaccgcactcctcatgggcatgcgctgtgcgtgttctaggatattctggccctgctc 323
Query: 123 tctatgtggtgaggccttgggttgtctggattcctgtggggtaacataaaatcctctggc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctatgtggtgaggccttgggttgtctggattcctgtggggtaacataaaatcctctggc 383
Query: 183 aatttacaattaagtcattcaaatttcatagcccatctgagtgcttgccacatcagaggg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatttacaattaagtcattcaaatttcatagcccatctgagtgcttgccacatcagaggg 443
Query: 243 atttttaaagggcaatgaaatgtctctgcagaaatgaatcataatgggtaaagtgtacca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atttttaaagggcaatgaaatgtctctgcagaaatgaatcataatgggtaaagtgtacca 503
Query: 303 aaaaaaattactgtgtgccagggaatccctgggtaagtgttccctgttattccccaaacc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaaaaattactgtgtgccagggaatccctgggtaagtgttccctgttattccccaaacc 563
Query: 363 c 363
|
Sbjct: 564 c 564
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 764
Length adjustment: 9
Effective length of query: 354
Effective length of database: 755
Effective search space: 267270
Effective search space used: 267270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_l24.g1 MSMg01no341_l24.g1 CHROMAT_FILE:
MSMg01no341_l24.g1 PHD_FILE: MSMg01no341_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:05 2005
(316 letters)
>mm_chr4_137747367_137748082
Length = 716
Score = 603 bits (312), Expect = e-177
Identities = 315/316 (99%)
Strand = Plus / Minus
Query: 1 cctgtaaagacaggagcagccggtgaacactggcacgcttctgttccgtgcagacacagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cctgtaaagacaggagcagccggtgaacactggcacgcttctgttccgtgcagacacagg 457
Query: 61 actcgggccagcccgtcagacttgctggtcacctcaagttcagtggaggaggaggagggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 actcgggccagcccgtcagacttgctggtcacctcaagttcagtggaggaggaggagggc 397
Query: 121 gcagaagcccaggatctgtctttatacgtaagcacttcaatggctcaagtggagaggatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gcagaagcccaggatctgtctttatacgtaagcacttcaatggctcaagtggagaggatg 337
Query: 181 cctcttacttacccacggcgtcacagcaaaggctgaggctcagttaaggctcaggcacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cctcttacttacccacggcgtcacagcaaaggctgaggctcagttaaggctcaggcacaa 277
Query: 241 gcagacttaagacagaattttcttgtttctatggcattttcagagtgaagcaagtctttc 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 276 gcagacttaagacagaattttcttgtttctatggtattttcagagtgaagcaagtctttc 217
Query: 301 ctaaattctctagggt 316
||||||||||||||||
Sbjct: 216 ctaaattctctagggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
