Query= MSMg01no342_d10.b1 MSMg01no342_d10.b1 CHROMAT_FILE:
MSMg01no342_d10.b1 PHD_FILE: MSMg01no342_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:40 2005
(491 letters)
>mm_chr4_45796917_45797806
Length = 890
Score = 779 bits (403), Expect = 0.0
Identities = 427/435 (98%), Gaps = 1/435 (0%)
Strand = Plus / Minus
Query: 57 gccctcccctcatgcttcagctactgtcctgtcagctcttgattaagccaatcaaaaggt 116
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 890 gccctcccctcatgcttcagccactgtcctgtcagctcttgattaagccaatcaaaagat 831
Query: 117 aagggaggaagagcatttacaaaataccagtggtgagccttaagaatagcaataccaaag 176
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 830 aagggaggaagagcatttacaaaatatcagtggtgagccttaagaatagcaataccaaag 771
Query: 177 tccaaagtctggacagtactccactctgtgccggcgcagaactaacaattgaatgataca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tccaaagtctggacagtactccactctgtgccggcgcagaactaacaattgaatgataca 711
Query: 237 aagacaaccttcacaccgtgaattaaattgttaccctaatcataccagcactccacatac 296
||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 710 aagacaaccttcacaccatgaattaaactgttaccctaa-cataccagcactccacatac 652
Query: 297 aaagcctccacagaccgctgagtaaactctgtcttgtgtcttctgagagtttgggaaatt 356
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aaagcctccacagaccgccgagtaaactctgtcttgtgtcttctgagagtttgggaaatt 592
Query: 357 tggtttcaatgttcctgaaaaagtgttgctatgtcagtggcctatgggaccccctcttca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tggtttcaatgttcctgaaaaagtgttgctatgtcagtggcctatgggaccccctcttca 532
Query: 417 ctctgagtcttttaaaaggggacgatatagcacgggcgagtggaaggcgacccatctgcc 476
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 531 ctctgagtcttttaaaaggggacgatacagcacgggcgagtggaaggcgacccatctgcc 472
Query: 477 tggaccgaagtccag 491
|||||||||||||||
Sbjct: 471 tggaccgaagtccag 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space: 423280
Effective search space used: 423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_d10.g1 MSMg01no342_d10.g1 CHROMAT_FILE:
MSMg01no342_d10.g1 PHD_FILE: MSMg01no342_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:40 2005
(440 letters)
>mm_chr4_45631746_45632585
Length = 840
Score = 789 bits (408), Expect = 0.0
Identities = 433/442 (97%), Gaps = 2/442 (0%)
Strand = Plus / Plus
Query: 1 caatgttaaagccacaagcatattctctcttgacacccccaattcgaccccctttt--tt 58
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 199 caatgttaaagccacaagcatattctctcttgacacccccaattcgaccccctttttctt 258
Query: 59 ccactttcccctttcctttctcccttctttcctctcccttcattcccctcccccttcagc 118
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 259 cccctttcccctttcctttctcccttctttcctctccctccattcccctcccccttcagc 318
Query: 119 catccctgccagtgctcctggagagcagccctctgagtaaatgggacaggatcttcttcc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 catccctgccagtgctcctggagagcagccctctgagtaaatgggacaggatcttcttcc 378
Query: 179 tgaggtccaaggtccccttctagagaagagggtggtggtggtggtgaggacacagacctg 238
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 379 tgaggtccaaggtccccttctagagaggagggtggtggtggtggtgaggacacagacctg 438
Query: 239 gatgacaaattccaggaaagcataagccagttgtgtttgcctgttgtgtttctgactccc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gatgacaaattccaggaaagcataagccagttgtgtttgcctgttgtgtttctgactccc 498
Query: 299 acttcttcctgctaaggtgtcgccctcccagggttccctacaggtaggctgccctagcac 358
| ||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct: 499 agttcttcctgctaaggtgtcgccctcccagggttccctgcaggtaggctgccccaacac 558
Query: 359 agcagtgagagaggaatcaggcagaacaacaggttccaacattagcctctcaggtgcagg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agcagtgagagaggaatcaggcagaacaacaggttccaacattagcctctcaggtgcagg 618
Query: 419 taggaggtcttcccagggaggg 440
||||||||||||||||||||||
Sbjct: 619 taggaggtcttcccagggaggg 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
