XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTTAG
TTTCCCGCAGTAAAAACAAAGCCGTTCAAAATTTCTCAAGAAAACTTTAA
TATGAAGGATTATATTTTCTTTTAAGTTTATCCCATGAAGGAAAAGGAAA
ACTTCGGTGATAAAATAGTGTAATTAGTCTCTAAAGACCATGTATGTGGC
AAGCATATGTCCATGACGTACCCAAGCACAGCAAAAACACCTATAACATA
ACTTCAGCATTTAAGGGTCCAGAACATCATGGTAGCATATCTTGCTGCTA
GACAGTTCTTCTATACCTGACAGGAAAGCTGTATATATGAATTTTAACAA
TAAAATACCCTAAGCAAGACCTACATGATGCAAGCACCAGTTGATATGCC
AACATGGGTAGAGGAATTCTCACAAGGCACCACCTTTAGATAAAAAAAGG
AAAAAAAAATACCGGCAGTTAATGGATGCTGAGAGTGTATCTTCCACAAT
AGTGAACTGCAAATAGGTTATCAAACCCAAATAGTCAGCCCAAAGAATAT
ATGTATATGAGCTACACAAATGGACTCAGCCGATTGTATTTATACTTAGC
ATGTACAAATGCATATATGTGGATATATCAATAATTTTTAAATACATCAT
TATAGTTCTTCTAAAGCCTTGAAATATCTGAAGATGGAAAAAGGAAAATA
AATCCTTAATAAAAAAAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTATGGGGT
TGTTTGATTTTCTGGAGTACACCTTCTTGAGTTCTTTATATATATATATT
GGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATACTTTTCCAAT
CTGTTGGTGGTCTTTTTGTCTTATAGACTGTGTCTTTTCCCTGGCATTGC
TGTTCTATTCAGGAATTTTTCCCCTATGCCCATATCTTCGAGGCTTTTCC
CCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGTTTTTATTTGAAGTTCC
TTGCTCCCCTTAGATTTGATCTTATTACAAGGAGATAGGAATGGATCAAT
TCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGA
AAAAGCTTTCTTCCACTGGATGGTTTTAACTCCCTTGTGGAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGG
NCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGC
TCTGTAGTAAAGTTTTAAGTTAGGCATGGNGATTCCACCAGAGGTTCTTT
TATTCCTGGAAAAAGATTTTTGCGATCCTAAGCTTTTGGGGTTTTCCCAA
GGAATTTGTGGAATGTTCCTTTCTAATTN

Query= MSMg01no342_d12.b1 MSMg01no342_d12.b1 CHROMAT_FILE:
MSMg01no342_d12.b1 PHD_FILE: MSMg01no342_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:40 2005
         (533 letters)



>mm_chr4_38478638_38479570
          Length = 933

 Score =  949 bits (491), Expect = 0.0
 Identities = 518/527 (98%), Gaps = 1/527 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcttagtttcccgcagtaaaaacaaagccgttcaaaatttctcaagaaaactttaa 67
           ||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 208 gaattcttagtttccagcagtaaaaacaaagcagtacaaaatttctcaagaaaactttaa 267

                                                                       
Query: 68  tatgaaggattatattttcttttaagtttatcccatgaaggaaaaggaaaacttcggtga 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 268 tatgaaggattatattttcttttaagtttatcccatgaaggaaaaggaaaacttcagtga 327

                                                                       
Query: 128 taaaatagtgtaattagtctctaaagaccatgtatgtggcaagcatatgtccatgacgta 187
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 328 gaaaatagtgtaattagtctctaaagaccatgtatttggcaagcatatgtccatgatgta 387

                                                                       
Query: 188 cccaagcacagcaaaaacacctataacataacttcagcatttaagggtccagaacatcat 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cccaagcacagcaaaaacacctataacataacttcagcatttaagggtccagaacatcat 447

                                                                       
Query: 248 ggtagcatatcttgctgctagacagttcttctatacctgacaggaaagctgtatatatga 307
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 448 ggtagcatatcttgctgctagacagttcttctatacctgacaggaaagctgtatatatta 507

                                                                       
Query: 308 attttaacaataaaataccctaagcaagacctacatgatgcaagcaccagttgatatgcc 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 attttaacaataaaataccctaagcaagacctacatgatgcaagcaccagttgatatgcc 567

                                                                       
Query: 368 aacatgggtagaggaattctcacaaggcaccacctttagataaaaaaaggaaaaaaaaa- 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 568 aacatgggtagaggaattctcacaaggcaccacctttagataaaaaaaggaaaaaaaaaa 627

                                                                       
Query: 427 taccggcagttaatggatgctgagagtgtatcttccacaatagtgaactgcaaataggtt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 taccggcagttaatggatgctgagagtgtatcttccacaatagtgaactgcaaataggtt 687

                                                          
Query: 487 atcaaacccaaatagtcagcccaaagaatatatgtatatgagctaca 533
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 atcaaacccaaatagtcagcccaaagaatatatgtatatgagctaca 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)