Query= MSMg01no342_m13.b1 MSMg01no342_m13.b1 CHROMAT_FILE:
MSMg01no342_m13.b1 PHD_FILE: MSMg01no342_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:24 2005
(433 letters)
>mm_chr4_33564267_33565100
Length = 834
Score = 706 bits (365), Expect = 0.0
Identities = 417/437 (95%), Gaps = 9/437 (2%)
Strand = Plus / Plus
Query: 4 ggaattctagtctcc--cctgaactac-caacaaaaccttgtctcaacaaaacaccataa 60
|||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctagtc--cagcctgaactacacaacaaaaccttgtctcaacaaaacaccataa 261
Query: 61 agcatacatgtgtactcacttggctagtgcagctctctgttataaaggtatgagaactgt 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agcgtacatgtgtactcacttggctagtgcagctctctgttataaaggtatgagaactgt 321
Query: 121 tggctggctctgatagcacagcatctctagtcttcccagagagccaaggtggagcggttg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 322 tggctggctctgatagcacagcatctctagtcttcccagagagccaaggtggagcgattg 381
Query: 181 ccccgagtctaaataggctgggcagtatagtgaggcttttgtcagtatgagaattttgat 240
||| |||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||
Sbjct: 382 ccctgagtctaaataggctgggcagtgtagtgaggcttgtgtcagtatcagaattttgat 441
Query: 241 aggtgtcacattaagtctgtagattatattttttactgtagcgctgcacttactaatttt 300
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 442 aggtgtcacattaagtctgtagattatatttggtactgtagctctgcacttactaatttt 501
Query: 301 gccgattcagaagcacagaaggtcttttcatagcatcttggggattttctttttcagtgt 360
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 502 gccgattcagaagcacagaaggtcttttcatagcatcttgggggttttctttttcaatgt 561
Query: 361 tttgaagttttcattgtagaggtctttcttatctttg---act-acacacacacacacac 416
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 562 tttgaagttttcattgtagaggtctttcttatctttggatactcacacacacacacacac 621
Query: 417 acacacacacttaactt 433
|||||||||||||||||
Sbjct: 622 acacacacacttaactt 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 834
Length adjustment: 9
Effective length of query: 424
Effective length of database: 825
Effective search space: 349800
Effective search space used: 349800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_m13.g1 MSMg01no342_m13.g1 CHROMAT_FILE:
MSMg01no342_m13.g1 PHD_FILE: MSMg01no342_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:24 2005
(397 letters)
>mm_chr4_33734497_33735293
Length = 797
Score = 727 bits (376), Expect = 0.0
Identities = 391/396 (98%)
Strand = Plus / Minus
Query: 2 gtgacgtgtctcgttttgacatgtatcattcttcctagaatcaaactattatgcaaaata 61
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 417 gtgacatgtctcgttttgacatgtatcattcttccttgaatcaaactattatgcaaaata 358
Query: 62 ggtggtggcaaataacctcggtgtcatgtttagttagggggaaagaaggtaatctcaaaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ggtggtggcaaataacctcggtgtcatgtttagttagggggaaagaaggtaatctcaaaa 298
Query: 122 gatttgaaagagaattaaggcctgcctagaaagctggggttggagatacatgacaatctt 181
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 297 gatttgaaagagaactaaggcctgcctagaaagctggggttggagattcatgacaatctt 238
Query: 182 tcccacttaaactcttagctttaacaggtgcgatctggagtgatggatggctcagtggtt 241
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 237 tcccacttaaactcttagctttaacaggtgcgatctggagtgatggatggttcagtggtt 178
Query: 242 aagagcactgactgctcttccgaaggtcctgagttcaaatcccagcaaccacatggtggc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 aagagcactgactgctcttccgaaggtcctgagttcaaatcccagcaaccacatggtggc 118
Query: 302 tcacaaccatccgtaatgagatctgacaccctcttctggagtgtctgaagacagctacag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 tcacaaccatccgtaatgagatctgacaccctcttctggagtgtctgaagacagctacag 58
Query: 362 tgtgcttacatataataataaacaaatctttgggcc 397
||||||||||||||||||||||||||||||||||||
Sbjct: 57 tgtgcttacatataataataaacaaatctttgggcc 22
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space: 305744
Effective search space used: 305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
