Query= MSMg01no343_l20.b1 MSMg01no343_l20.b1 CHROMAT_FILE:
MSMg01no343_l20.b1 PHD_FILE: MSMg01no343_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:41 2005
(375 letters)
>mm_chr4_36143969_36144744
Length = 776
Score = 646 bits (334), Expect = 0.0
Identities = 362/372 (97%), Gaps = 5/372 (1%)
Strand = Plus / Plus
Query: 5 gaattccatataaggtttataaatacacaaactgtatctgccccccaactctccctccca 64
||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 205 gaattccatataaggattataaatacacggactgtatctgccccc-aactctccctccca 263
Query: 65 taatggcatgaggtcca-atatcaaaactggtggtctgagagggaaagtggggtagtaac 123
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taatggcatgaggtccaca-atcaaaactggtggtctgagagggaaagtggggtagtaac 322
Query: 124 agctgagtgatggttttggataccgaaattaattatattacattaaaatgttcatattga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agctgagtgatggttttggataccgaaattaattatattacattaaaatgttcatattga 382
Query: 184 tatggaccttataaatgattactaggataaaacatgtgacagtatgtcattgtaatagat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatggaccttataaatgattactaggataaaacatgtgacagtatgtcattgtaatagat 442
Query: 244 cattatattttttatttcaagcattttaccatgtcactgtaaccctgaaagtactgatta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cattatattttttatttcaagcattttaccatgtcactgtaaccctgaaagtactgatta 502
Query: 304 atagtggagaaatcataatattttt--cagttctcataattcccacaatttaaaatgttg 361
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct: 503 atagtggagaaatcataatttttttttcagttctcataattcccacaatttaaaatattg 562
Query: 362 ctatattctgca 373
||||||||||||
Sbjct: 563 ctatattctgca 574
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 776
Length adjustment: 9
Effective length of query: 366
Effective length of database: 767
Effective search space: 280722
Effective search space used: 280722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_l20.g1 MSMg01no343_l20.g1 CHROMAT_FILE:
MSMg01no343_l20.g1 PHD_FILE: MSMg01no343_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:41 2005
(407 letters)
>mm_chr4_36315209_36316015
Length = 807
Score = 772 bits (399), Expect = 0.0
Identities = 405/407 (99%)
Strand = Plus / Minus
Query: 1 tctgagctcctctttaacatatgtagtctaaggcagtaggaaaaaagtatagaaatacgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tctgagctcctctttaacatatgtagtctaaggcagtaggaaaaaagtatagaaatacgt 548
Query: 61 gtactcctaggagcttccaggcccatttaattaaaatgccatgcaagatatccttttggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gtactcctaggagcttccaggcccatttaattaaaatgccatgcaagatatccttttggg 488
Query: 121 agtgtcacagggaatacagaaaatttagcaagctccaagaggtgagcttgcagaagacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agtgtcacagggaatacagaaaatttagcaagctccaagaggtgagcttgcagaagacaa 428
Query: 181 acctgttctactgtgacatgaaacctatttcactttagaaattactcatgtaaattagac 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 427 acctgttctactgtgacatgaaacctatttcactttagtaattactcatgtaaattagac 368
Query: 241 tttcctgcatggccagcaatagatgtatgacccagtatgttcgatatatatccatgtacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tttcctgcatggccagcaatagatgtatgacccagtatgttcgatatatatccatgtacc 308
Query: 301 attggatataaaacctcaccttttatgtataaagagtatacattcttggcataaggagga 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 307 attggatataaaacctcaccttttatgtataaagagtatacattcttgggataaggagga 248
Query: 361 ctttgaaagtgtcttcaaacaagtcaagtgaacagctggatctagtg 407
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ctttgaaagtgtcttcaaacaagtcaagtgaacagctggatctagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space: 317604
Effective search space used: 317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
