BAC Information

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BAC

Clone NameMSMg01-343L23
Chromosome4 (Build37)
Map Location 119,730,269 - 119,730,631
singlet/doubletsinglet
Overlap geneHivep3
Upstream geneOTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
Downstream geneEdn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343L23.T7 (MSMg01no343_l23.b1)MSMg01-343L23.TJ (MSMg01no343_l23.g1)
ACCAG456980AG456981
length825766
length of high quality
(start - end)		99 (130 - 228)359 (70 - 428)
definitionCHROMAT_FILE: MSMg01no343_l23.b1 PHD_FILE: MSMg01no343_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:42 2005CHROMAT_FILE: MSMg01no343_l23.g1 PHD_FILE: MSMg01no343_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCGGATTTCTACACCACTCATTTTTCTTAGAAGATCCGCGTTATTCT
TTCTGTGTTCCACTACACAATGGGAAATAATCTCCAAGACCCAATAGCGG
GTCAGTGAACAGGAGACAAAGGACAGCATCGACCCTCCAGCGTGGCTGTG
GTCCCTCCAGTCTCTCTCTGCATACACTGCCTTTCTGTCCAGTGCTGTCA
AACCATTGTGGCATTCTGTTCATAGGATGTGGTGGAAGGACCAGCTCTTA
TAGCTCCCACTTTTGTTTGCCCTTAATTCATCTGTTTTGCACAGTCTCAC
AGATTGCTACTCTGGCCATCTGTCTTCGTCAGACCCCGTCCGTTATCTCC
TAATCTTATTTACTCACTTCCCTGTCATGCCTGCTCCAAATTTCATCTTG
CCCTGTACCTTATCCCTTTATTTCTTATCAACCCTTCTTCATTGCCTATT
TTATATAAACTTTTTAGCTCCATTCTACACATTACCATATTTTATTACAT
CTTTCTTATTTACACTTATCCCCTTTTATTTCTATCACTTCTTTACACTT
ATTTTCTCTTTCTTACTACACCTATACTATTATTTCCTATCGTCCCCTAC
TCAAAATTACTTTCTTTACAATATTCCCCTATTTCACCTTTTTTTTCCAC
CATTTAATACCATTCTAATATTTCTATCCTACACATCAAATCATACCTAT
CATCCCCCTACCCAATACCTTCCCACTCAATTAACTCATCCAATCATTTT
ATTACTACAATAATTATTTCAATTATCACACTTCTACATAACTATATTCA
TACCCACAACCCTTTCCCTCTTTCG

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGAGGTTTAAGTCCTATAATTCTGGAGAAA
AGAAAGTTTAATCTCCCATTACTTGCTCCACCAACCAACTCTTTCACCAG
AATATTCCTCATTTGAGGATGGAATGCTTGATAACAAAATAGGCACGGAG
ATATTTTGCAGCACATAAAAAAGGGTCATGACCCACAATATGTAGCAAGT
ACCTCCAATAAAATAAGTAAAAGCAGGGAATAAAACGGGGAGAAAAAAAA
AAAAAAACAACAGAGCATCGTTCAAGCAGTAAAAACGCTGGTCTCAGCAA
TCACCACAGATCACCACTAAAGGTCACTGTTCCCTCAACTGGTTGACAGT
GAAGAATGACGGTCACTTTCGTTGTTGGAGATGCGGAGTCAATGGACAGG
TGTCAATGCAGCTGGAAGGTATGTGTTAGGGGGAACCTCTTGACATGTCC
CCCACAGTGCATGTTTGGCCCTGCTGCCCCCGGAGTAAACACAAGTCTAC
CCCGACAAACACCCGCTTAATAAAACTTTTGTGGGGGGGTGGTTCTCTTT
TTTCCATACTCTTACGTTTCTCACTCTCGCCTCTAACTCTCTTCTCTATC
TCTCCTTCTATTTTTTTATTTATCTTTCGACCTTTCACACATCTTTTTTT
ATTTAACATTCCCTTTTTTTTTTTTCTTTTTTTCCACCTCCCTTTCTTCT
TTACTCTATATTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_l23.g1 MSMg01no343_l23.g1 CHROMAT_FILE:
MSMg01no343_l23.g1 PHD_FILE: MSMg01no343_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:42 2005
         (359 letters)



>mm_chr4_119730069_119730831
          Length = 763

 Score =  659 bits (341), Expect = 0.0
 Identities = 356/363 (98%), Gaps = 4/363 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaggtttaagtcctataattctggagaaaagaaagtttaatctcccattacttgctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttgaggtttaagtcctataattctggagaaaagaaagtttaatctcccattacttgctcc 504

                                                                       
Query: 61  accaaccaactctttcaccagaatattcctcatttgaggatggaatgcttgataacaaaa 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 accaaccaattctttcaccagaatattcctcatttgaggatggaatgcttgataacaaaa 444

                                                                       
Query: 121 taggcacggagatattttgcagcacataaaaaagggtcatgacccacaatatgtagcaag 180
           ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taggcacagagatatttggcagcacataaaaaagggtcatgacccacaatatgtagcaag 384

                                                                       
Query: 181 tacctccaataaaataagtaaaagcagggaataaaacggggag----aaaaaaaaaaaaa 236
           |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||
Sbjct: 383 tacctccaataaaataagtaaaagcagggaataaaacggggaggaaaaaaaaaaaaaaaa 324

                                                                       
Query: 237 aacaacagagcatcgttcaagcagtaaaaacgctggtctcagcaatcaccacagatcacc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aacaacagagcatcgttcaagcagtaaaaacgctggtctcagcaatcaccacagatcacc 264

                                                                       
Query: 297 actaaaggtcactgttccctcaactggttgacagtgaagaatgacggtcactttcgttgt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 actaaaggtcactgttccctcaactggttgacagtgaagaatgacggtcactttcgttgt 204

              
Query: 357 tgg 359
           |||
Sbjct: 203 tgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 763
Length adjustment: 9
Effective length of query: 350
Effective length of database: 754
Effective search space:   263900
Effective search space used:   263900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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