BAC Information

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BAC

Clone NameMSMg01-343P23
Chromosome4 (Build37)
Map Location 54,607,356 - 54,607,691
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280, LOC666901
Downstream geneLOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343P23.T7 (MSMg01no343_p23.b1)MSMg01-343P23.TJ (MSMg01no343_p23.g1)
ACCAG457168AG457169
length762774
length of high quality
(start - end)		336 (67 - 402)330 (67 - 396)
definitionCHROMAT_FILE: MSMg01no343_p23.b1 PHD_FILE: MSMg01no343_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:03 2005CHROMAT_FILE: MSMg01no343_p23.g1 PHD_FILE: MSMg01no343_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAACCGCGGAATTCCTTAC
TTTTTTCACACTTCATATAAGCACTTAGCCTACTTGCACAGTTGCTAAGG
ATTTTGAATCCCACATTCAGAACATCTGCTTCCCCCCGAGTGGCAGAACT
CTCTGACTCACTCCACTGTGCACTACATCTGTCTAGCATTGACATACACG
CTTCGGTCTGCCATCAACATTCTCAATTCTTGCCTCTCTAACCTTCTCAG
TGATGTCTTCAATTTCTCATGAATCGATTTTTTAATAAAAACTTTCTTTT
TCTTTGAAATCTATGTTTCTTTTTATTTTATTTTATTTTATTAAATATTT
TCTTTATTTACATTTCAAATGCTATCCTGAAAATTCCCTATACCTTCCCC
CTGGCCCGCCCCACTATCCCACCCACTTCTACTTCTTTGGCCTGGCGTTC
CCCTGTACTGGGGCATATAAAGATGGCAAGACCTAAGGGGCTCTCTTCCC
AATGATGGTTGATAAGGCCATCTTCTGCTACATATGCAGCTAAAAAAATG
AACCCCTGGGGGGTGGGGGAAATGGAAAAAATATTATTTATGACAAATTC
TCATGTATCCTTGAAACTAATCCCTTCCATCCCTACCGTGACACCTCTTT
TTTTTATCTCTCGGTTTTCCTCATACACTCTATCCTATTTAACCTCTTCC
ACATTCCTAACTATCATCTCACTTCTTCATCTTTCTCTTTTCATCCTCTT
TCTCTCCCTTTT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTAGAAAGTGTTTAATTTCTTTCTTTGTTTCCTCC
CTGAACAAGTTATCATTGAGTAAAGTATTCTTCGGTTTTCGTGAGTATGT
GGGCTTTTTGTTGTTTCTGTTGTTCTTGAATTCCAGCCTTAATCCATGGT
GATATGACAGAATGCAAGGAGATATTTTCATCTTCTTACATATGTTGCAG
CTTGCTTTGTGCCTGACTATAGGGTCAATTTTGGAGAAGGTTCCCTAAGG
TGCTGAGAAGATGGTATATTCTTTTGTTTGGGGTGAAAGGTTATGGGGAT
AGCAGGTAAGTCTATTTGGTTCATGAAATCTGTTAGTTTTATTGTTTATC
TAATTATTTTCCGCCCCAACGACCTGTCCATTGATAATTATTTTGATCGC
TGAATCTCTCCCCTATTTATCGCAGGTCCTCACATGATCACCTTTTTCTT
CTTTTATTCTACTTCCTTTCTTCCGGGGTTTCTCTTTTTTTTTTCTTTTT
TTCTCCACCCCCTCCCTCTCCCCCTTTATCTTGTACTTACCTCTTTTTCT
TTCTTACATCGCTATTTTCCTATTTGTTTTTTTCCGTCCTCACCCCCGCC
ATTTACTCTCTTATTTATTCATTCTTTTTATTTTTTTCCCTTCCCCCTTT
CCCCCTTTTTTTCTTCCTTCCCCTCCCTCCTTTCTTATTTTTTTCGCATA
CCCTTTTTTTTTTTCTTTCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_p23.b1 MSMg01no343_p23.b1 CHROMAT_FILE:
MSMg01no343_p23.b1 PHD_FILE: MSMg01no343_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:03 2005
         (336 letters)



>mm_chr4_54607261_54607996
          Length = 736

 Score =  627 bits (324), Expect = 0.0
 Identities = 333/336 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataagcacttagcctacttgcacagttgctaaggattttgaatcccacattcagaacatc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 431 ataagcacttagcctacttgcacagttgctaaggattttgaagcccacattcagaacatc 372

                                                                       
Query: 61  tgcttccccccgagtggcagaactctctgactcactccactgtgcactacatctgtctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgcttccccccgagtggcagaactctctgactcactccactgtgcactacatctgtctag 312

                                                                       
Query: 121 cattgacatacacgcttcggtctgccatcaacattctcaattcttgcctctctaaccttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cattgacatacacgcttcggtctgccatcaacattctcaattcttgcctctctaaccttc 252

                                                                       
Query: 181 tcagtgatgtcttcaatttctcatgaatcgattttttaataaaaactttctttttctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tcagtgatgtcttcaatttctcatgaatcgattttttaataaaaactttctttttctttg 192

                                                                       
Query: 241 aaatctatgtttctttttattttattttattttattaaatattttctttatttacatttc 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaatctatgtgcctttttattttattttattttattaaatattttctttatttacatttc 132

                                               
Query: 301 aaatgctatcctgaaaattccctataccttccccct 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 131 aaatgctatcctgaaaattccctataccttccccct 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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