Query= MSMg01no344_c11.b1 MSMg01no344_c11.b1 CHROMAT_FILE:
MSMg01no344_c11.b1 PHD_FILE: MSMg01no344_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:15 2005
(450 letters)
>mm_chr4_136048777_136049626
Length = 850
Score = 862 bits (446), Expect = 0.0
Identities = 446/446 (100%)
Strand = Plus / Minus
Query: 5 gaattctactttattcccactgccctatacttttttttttctttttcctttttctttttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaattctactttattcccactgccctatacttttttttttctttttcctttttctttttt 436
Query: 65 ttttccagtctgcaattaaaataagatcgataaattatatagatcagtggctctggagtc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttttccagtctgcaattaaaataagatcgataaattatatagatcagtggctctggagtc 376
Query: 125 ataaaaagccaggtatacagtatatcatttagtaacaacatgttcaagttacttcagtgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ataaaaagccaggtatacagtatatcatttagtaacaacatgttcaagttacttcagtgc 316
Query: 185 acttgaatataaaataaggataataactaaacttaagaactaagttcggggctggtgaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 acttgaatataaaataaggataataactaaacttaagaactaagttcggggctggtgaga 256
Query: 245 tggctcagtgggtaagagcacccgactgctcttccgaaggtccaaagttcaaatcccagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tggctcagtgggtaagagcacccgactgctcttccgaaggtccaaagttcaaatcccagc 196
Query: 305 aaccacatggtggctcacaaccacccgtaatgagatctgatgccctcttctggagtgtct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aaccacatggtggctcacaaccacccgtaatgagatctgatgccctcttctggagtgtct 136
Query: 365 gaagacagctacagtgtacttacatataataaataaataaatctaaaaaaaaaaaaaaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gaagacagctacagtgtacttacatataataaataaataaatctaaaaaaaaaaaaaaag 76
Query: 425 aactaagttcatggggctggagagat 450
||||||||||||||||||||||||||
Sbjct: 75 aactaagttcatggggctggagagat 50
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_c11.g1 MSMg01no344_c11.g1 CHROMAT_FILE:
MSMg01no344_c11.g1 PHD_FILE: MSMg01no344_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:15 2005
(437 letters)
>mm_chr4_135880432_135881268
Length = 837
Score = 816 bits (422), Expect = 0.0
Identities = 434/440 (98%), Gaps = 5/440 (1%)
Strand = Plus / Plus
Query: 1 cttctgcacagctttctggcttccacataggcagacaagcagatacatacatacagaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cttctgcacagctttctggcttccacataggcagacaagcagatacatacatacagaaat 262
Query: 61 aaaaataatttttaaaagttcatttttatttcaagtacattaaggttttgcctgcatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaaaataatttttaaaagttcatttttatttcaagtacattaaggttttgcctgcatgta 322
Query: 121 tgtctgtatgagaaatgttggagcttctgaattggagttacagatagttgtgagctgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgtctgtatgagaaatgttggagcttctgaattggagttacagatagttgtgagctgtca 382
Query: 181 tgccagtctggaaattaaaccgtggtccttcatctttccagccccaaattaaaaaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgccagtctggaaattaaaccgtggtccttcatctttccagccccaaattaaaaaaaaaa 442
Query: 241 aaaaaaaagaaaagaaaaaaaaaggtggctgttattttaaacagtacgtaggctctcaga 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaaaaa--gaaaagaaaaaaaaaggtggctgttattttaaacagtacgtaggctctcaga 500
Query: 301 ccctgtctaacctgatcatgctgtatgtatagtctccagttagtgttttatgactgcact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctgtctaacctgatcatgctgtatgtatagtctccagttagtgttttatgactgcact 560
Query: 361 gggaagcaagtttttttttttttttta---aagatttatttatttattattatatgtaag 417
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 gggaagcaagttttttttttttttttttttaagatttatttatttattattatatgtaag 620
Query: 418 tacactgtagctgtcttcag 437
||||||||||||||||||||
Sbjct: 621 tacactgtagctgtcttcag 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
