BAC Information

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BAC

Clone NameMSMg01-344G13
Chromosome4 (Build37)
Map Location 19,298,481 - 19,298,863
singlet/doubletsinglet
Overlap geneCngb3
Upstream geneLOC667251, LOC435772, LOC623122
Downstream geneCpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800, E130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344G13.T7 (MSMg01no344_g13.b1)MSMg01-344G13.TJ (MSMg01no344_g13.g1)
ACCAG457481AG457482
length795744
length of high quality
(start - end)
387 (49 - 435)528 (68 - 595)
definitionCHROMAT_FILE: MSMg01no344_g13.b1 PHD_FILE: MSMg01no344_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:35 2005CHROMAT_FILE: MSMg01no344_g13.g1 PHD_FILE: MSMg01no344_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:35 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAAGGATACCTAGGAAAATGAAATAGAACACCGTTCCCACCT
TTTAGGAGCTTACTGTCAGGTGAGAAAGACAGCTAAAGACACAGAGAAGG
AATAATGGTAAAAGTGTGGATGCTTATTTATTGAATAAAGGTAGCTAAGG
AGACAGGAAGGGAATAGTAACTATGTGCATGTTTATTCACTGAATTTACC
TGGTAGTTAACTCCTACCGGTCATACCTTGGGGTATGTGTACATATCATC
TTATTCAACCTTTATTATAGGCTTATAAATTAGGAACTAATTTTAATTTA
GTAGTAGTAGAAGAGAGAGATAATTTAGTTTAGTAAATTTTAGTAGTAAA
ATTTGACCCCTGGTCTGCCTGCTTCTTTTTTTGTTTTTTGTTTTTGTTTC
TGCTTTTTAATTTGGCTCCCCTTTTCCATAAACGTTTCTACTGCATACCC
TTCTACCGTCCTTTCTTTTTCACTCTTTACAGTTACCTTCCCCCTTTAAT
TCTTTACATCTATCAGCCCTCCTGCTATCTTATTTTCTCTCCCCCCTTTC
TTTAACTTCCTTACCCCTCACTCCCTTACATTTATTTCCCCTCTCATCTA
CCCCTCCTCACCCCTCCTTCTTATCATTCTCTTTTTTAATCTACCCTCCA
CCTCACTACCACCCCTCTCCTCCTCCTCTAACCCTCCTCCTTTCTCCCTT
TTACCCCATTATTTCTTCCTACTTATATTTCTTTAAACCTTTCTC
ATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGTGGCTCATGATCTAAGATCAACAATTGATA
AACAGGACCTCACAAAAATGACAAGCTTCTGTAAGGCAAAAGACATACTC
AATAAGAAAAATCAGTAATCTACAGATTGGGAAAAAATCTTCACTAACCC
CACATCTGATATATGGCTAATATTCAAAATAAATAAAGAACGCAAGCAGT
TAACCACCAAAAAAAAAAAAAAACCAAAAACAAAAACCCAAACAACCCAA
TCAAAAAATGGTGTATAGAACTAAACCAAGAATTCAGAACAGAGGAATCT
CAAATGGGTGAGAAACACCTAAAAAAATGTTCAAAGTCCTTAGTGATCAG
AGAAATGCAAATCAAAATGACTGTGAGATTCTACCTTACACCAATCAGAA
TGGCTATGATCAAAATCTCTGGTGACTACAAATGTTGGAGAGGATGTAGA
GAAAGAGGAACACTTATGGGATTGCAAACTGGTACAACCACTCTGAAAAT
CAATCTGGAGGTTCCTCAGAAAACTGAAAATAGATCTACCTGAAGACCCA
GCAAAACCCTCTTGGGAAAATATGCAAAAGATGCTCCACAGGGCCACAGT
GGCACATGTTCCACTATGTTCACAATGGCTTTATTTGTGATAAACAGAAA
CTGGAAACAACCCAAAATGCCCTAGGATGTAAAAATGGTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_g13.b1 MSMg01no344_g13.b1 CHROMAT_FILE:
MSMg01no344_g13.b1 PHD_FILE: MSMg01no344_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:35 2005
         (387 letters)



>mm_chr4_19298197_19298983
          Length = 787

 Score =  679 bits (351), Expect = 0.0
 Identities = 375/383 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaggatacctaggaaaatgaaatagaacaccgttcccaccttttaggagctta 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gaattccaaggatagataggaaaatgaaatagaacaccgttcccaccttttaggagctta 608

                                                                       
Query: 65  ctgtcaggtgagaaagacagctaaagacacagagaaggaataatggtaaaagtgtggatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ctgtcaggtgagaaagacagctaaagacacagagaaggaataatggtaaaagtgtggatg 548

                                                                       
Query: 125 cttatttattgaataaaggtagctaaggagacaggaagggaatagtaactatgtgcatgt 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 547 cttatttattgaataaaggtagctaaggagacaggaagggaatggtaactatgtgcatgt 488

                                                                       
Query: 185 ttattcactgaatttacctggtagttaactcctaccggtcataccttggggtatgtgtac 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 487 ttattcactgaatttacctggtagttaactccttccggtcataccttggggtatgtgtac 428

                                                                       
Query: 245 atatcatcttattcaacctttattataggcttataaattaggaactaattttaatttagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atatcatcttattcaacctttattataggcttataaattaggaactaattttaatttagt 368

                                                                       
Query: 305 agtagtagaagagagagataatttagtttagtaaattttagtagtaaaatttgacccctg 364
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 367 agtagtagaagagagagataatttagcttagtaaattttagtagtaaaatttgacccctg 308

                                  
Query: 365 gtctgcctgcttctttttttgtt 387
           |||||  || |||||||||||||
Sbjct: 307 gtctgtttgtttctttttttgtt 285


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)