BAC Information

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BAC

Clone NameMSMg01-344N16
Chromosome4 (Build37)
Map Location 9,704,121 - 9,704,403
singlet/doubletsinglet
Overlap genenone
Upstream geneChd7, LOC666782, LOC100039584, 4933402J24Rik, Asph
Downstream geneGdf6, 4930448K20Rik, LOC666840, 1700123O12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344N16.T7 (MSMg01no344_n16.b1)MSMg01-344N16.TJ (MSMg01no344_n16.g1)
ACCAG457817AG457818
length774792
length of high quality
(start - end)
471 (70 - 540)283 (69 - 351)
definitionCHROMAT_FILE: MSMg01no344_n16.b1 PHD_FILE: MSMg01no344_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:10 2005CHROMAT_FILE: MSMg01no344_n16.g1 PHD_FILE: MSMg01no344_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCAACTCATTATTTCGCGGCGCTAAACGACTCACTATTCCGAGAGGATCC
GCGGAATTCAATTATTGCAAGCACTATAGAAATCTATATGGAAGTTACTT
GAAAGCAAAATATAGCATCTGTAATACTCCAAGGTATATTACTGTAAGTC
AAGAATCAAATCATATGGTCATCTGCTCCTCTCTGTTCCAGAGATAACTG
CATCTTCTTGAGCCACCCTTGTCCCTTAGACATAATGGTGATGGCCATCA
GATTTGCCTGTATTGGGCATCTGGTTACCAGAGCTACTGACTCATCTAGC
AAAGCAGAGCTTGTTGCCATCAGTGACCCCTTCATTGACTCCCAACTACA
TGGTCTACATGTTTCAGTATGACACTACCCATGGCAAGTTCAACATCACA
ATGAAGGCTGAGAATGGGAAGCTTGTCATCAATGGGAAGGCCAACATCAT
CTTCCAGAAGTGAGACCCCACTAACATCAAATGGGGTGATGCTGGTGCTG
AGTATACTAAAGAGTCTACTGGCATCTTTACCACAGTGGAAAAGGCCAGG
ACCCCCTTGAAGGATGAAGCCAAAAGAGGAATCATCTCTGCCCCTTATGC
TGATGTCCCCCTTGAATGTGAACGGGTATGAACCCATGAAAACTATGAAA
ACTTCTTTCTAAAATTTCACCTATGGCTTTCCTGTATTACCCACATATTT
TATATACTCCTGAACTCTTGGTTTTCCTTGAACAAATTTGTTTATTTTGG
TTATGACCTCCGAAACTACTTTTG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAACTCTTATTCTGATCACTGAATTCACTTTC
TGACCACTTCTTTCAGACTTCTAACATATTTTTAGTTGCTGCTTAACTGC
TGGAAGATGAGAGGGGCTGCCTTAGCCATTTCTTCATTGACTAGATAACC
AGCCAGGTTACTAAAGGACACAGCATTTCATACAAGCTGAATTAGATTTA
GATTCCCTTTGTAGGATTGAGACACTGGGAAGTCATAGCAAGGCCTGAAT
CACAGGTGTGTTATGGCCGTAGGGTGACCAGCTCTAATCAGATATCAGCT
CCCAGAGTATCCATTGTAATGAAGAGAAAATGAGCCCTGGGTTCCCCGGA
CTGGGTAACTGGTCTCTCCCAACTCTGTTCTCTACCTATATTTATTTTGC
ATCCTGCTCTCCAGAAAGAAATTATGTATCTATTCCTAATCTTGAACTTA
CGTATCTTTTTCTGGCTCATACCGGTACCCCTGTTTTCGATGTATCCTAT
ATCGTATTCTCCCGATTATTTTACATTTCTTATTTATGTTTCTCCTCTGG
CGCACTTCTTATCTAATTATTCTTCCCTTTTCTATTTACACCCCTCCCTC
TTGATAATTCTCTCCTTTTCCTCCTTTTCTCCTAATTTGCTTTTCCTCTC
TTTTACCCCACTATCTCCCTCTCTATATCAATCGATCATCCTTTGCACCT
TTCTTTCATCTTTCTTTCTTTCCCTTTTATCTTACCTTGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_n16.g1 MSMg01no344_n16.g1 CHROMAT_FILE:
MSMg01no344_n16.g1 PHD_FILE: MSMg01no344_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:10 2005
         (283 letters)



>mm_chr4_9703921_9704603
          Length = 683

 Score =  470 bits (243), Expect = e-137
 Identities = 273/283 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactcttattctgatcactgaattcactttctgaccacttctttcagacttctaacata 60
           |||||||||||||||| | |||||||||||||||||||||||||| |||| |||||||||
Sbjct: 201 aaactcttattctgataattgaattcactttctgaccacttctttgagacgtctaacata 260

                                                                       
Query: 61  tttttagttgctgcttaactgctggaagatgagaggggctgccttagccatttcttcatt 120
           ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 261 tttttagttgctgcttaactgctgggagatgagaggggctgccttagtcatttcttcatt 320

                                                                       
Query: 121 gactagataaccagccaggttactaaaggacacagcatttcatacaagctgaattagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactagataaccagccaggttactaaaggacacagcatttcatacaagctgaattagatt 380

                                                                       
Query: 181 tagattccctttgtaggattgagacactgggaagtcatagcaaggcctgaatcacaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tagattccctttgtaggattgagacactgggaagtcatagcaaggcctgaaccacaggtg 440

                                                      
Query: 241 tgttatggccgtagggtgaccagctctaatcagatatcagctc 283
           |||||||| || ||||||||||||||||| |||||||||||||
Sbjct: 441 tgttatgggcggagggtgaccagctctaaacagatatcagctc 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)