Query= MSMg01no345_c24.b1 MSMg01no345_c24.b1 CHROMAT_FILE:
MSMg01no345_c24.b1 PHD_FILE: MSMg01no345_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:35 2005
(434 letters)
>mm_chr4_141135053_141135885
Length = 833
Score = 619 bits (320), Expect = 0.0
Identities = 385/432 (89%), Gaps = 46/432 (10%)
Strand = Plus / Plus
Query: 6 gaattccaggacagttccc---gctacacagagaaaccctgtctcgaaaaagccagaaaa 62
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccaggacag---ccagggctacacagagaaaccctgtctcgaaaaagccagaaaa 263
Query: 63 aaaaagagggggggggagaaagaaagaaaaactaagttgtagttacccagttctgatcac 122
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaa--aggggggggaagaaagaaagaaaaactaagttgtagttacccagttctgatcac 321
Query: 123 aggcccttgtgtgagcactgtccaattgtccagcatttcctctacccttccttccttcct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aggcccttgtgtgagcactgtccaattgtccagcatttcctctacccttccttcct---- 377
Query: 183 tccttccttccttccttccttccttccttccttccttccttcctttctttctttctttct 242
|| |||||||||||| ||||| |||||||||||||
Sbjct: 378 ---tt-cttccttccttc---ccttc---ccttccttccttc------------------ 409
Query: 243 ttctttctttctttctttctttctttctttctttctttctttctttctttcatgtatgtg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ------ctttctttctttctttctttctttctttctttctttctttctttcatgtatgtg 463
Query: 303 agtatgctgtcgctgtcttcagacacaccagaagagggcatcggatccctattacagatg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 agtatgctgtcgctgtcttcagacacaccagaagagggcatcggatccctattacagatg 523
Query: 363 gttgtgagccaacatgtggttgctgagatctgaactcaggacctctgttagagcagtcag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gttgtgagccaacatgtggttgctgagatctgaactcaggacctctgttagagcagtcag 583
Query: 423 tgtttttaactg 434
||||||||||||
Sbjct: 584 tgtttttaactg 595
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 833
Length adjustment: 9
Effective length of query: 425
Effective length of database: 824
Effective search space: 350200
Effective search space used: 350200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_c24.g1 MSMg01no345_c24.g1 CHROMAT_FILE:
MSMg01no345_c24.g1 PHD_FILE: MSMg01no345_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:35 2005
(438 letters)
>mm_chr4_141307825_141308661
Length = 837
Score = 766 bits (396), Expect = 0.0
Identities = 424/438 (96%), Gaps = 9/438 (2%)
Strand = Plus / Minus
Query: 1 ctcaggaacttgggaagctcctggccctctctgaatggagccatttccctccctactggc 60
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 476 ctcaggaacttgagaagctcctggccctctccgaatggagccatttccctccctactggc 417
Query: 61 agagggacacacagctgggtgtggtgcctgtaagataaacacatgctggtctgtaggctc 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agacggacacacagctgggtgtggtgcctgtaagataaacacatgctggtctgtaggctc 357
Query: 121 cctctgaagtacagatgctgttctgcacttcagagtcctcgctaaccgggacctctcagc 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 356 cctctgaagtacagatgctgttctgcacttcagagtcct-gctaaccgggacctctcagc 298
Query: 181 ttgtttatcccctcccctaagcaaccttccccagctcacaggctcccttccctcagctcc 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttgttcatcccctcccctaagcaaccttccccagctcacaggctcccttccctcagctcc 238
Query: 241 tcagtctcctcacagccctgctacttcttgggctcagctccttctcttttgcccggtctc 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 237 tcagtctcctcacagccctgctactccttgggctcagctccttctcttttgcccggtctc 178
Query: 301 ttggttttcctgtcttggtctctctctttccctctttctctcctccctgccccctctcta 360
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 177 ttggttttcctgtcttggtctctctctttc--------tctcctccctgccccctctcta 126
Query: 361 caggtcatattcagtcttccttttatcactgctctgaactcttccagatgtctctgacct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 caggtcatattcagtcttccttttatcactgctctgaactcttccagatgtctctgacct 66
Query: 421 ttctctctcttatctaca 438
||||||||||||||||||
Sbjct: 65 ttctctctcttatctaca 48
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 837
Length adjustment: 9
Effective length of query: 429
Effective length of database: 828
Effective search space: 355212
Effective search space used: 355212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
