Query= MSMg01no345_j11.b1 MSMg01no345_j11.b1 CHROMAT_FILE:
MSMg01no345_j11.b1 PHD_FILE: MSMg01no345_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:04 2005
(132 letters)
>mm_chr4_36257124_36257655
Length = 532
Score = 232 bits (120), Expect = 6e-66
Identities = 126/128 (98%)
Strand = Plus / Minus
Query: 5 gaattcaacatgtatccttgcatgtactaaaatgacctatttcataaaaataaaatgctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gaattcaacatgtatccttgcatgtactaaaatgacctatttcataaaaataaaatgctt 273
Query: 65 cagttgaaatcaatatttctacatgctatcacaatctcacttttatacattggctttgct 124
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 caactgaaatcaatatttctacatgctatcacaatctcacttttatacattggctttgct 213
Query: 125 ggatgtgt 132
||||||||
Sbjct: 212 ggatgtgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space: 64976
Effective search space used: 64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no345_j11.g1 MSMg01no345_j11.g1 CHROMAT_FILE:
MSMg01no345_j11.g1 PHD_FILE: MSMg01no345_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:04 2005
(510 letters)
>mm_chr4_36143979_36144889
Length = 911
Score = 903 bits (467), Expect = 0.0
Identities = 501/513 (97%), Gaps = 6/513 (1%)
Strand = Plus / Plus
Query: 1 catataaggattataaatacacaaactgtatctgccccccaactctccctcccataatgg 60
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 201 catataaggattataaatacacggactgtatctgccccc-aactctccctcccataatgg 259
Query: 61 catgaggtcca-atatcaaaactggtggtctgagagggaaagtggggtagtaacagctga 119
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 catgaggtccaca-atcaaaactggtggtctgagagggaaagtggggtagtaacagctga 318
Query: 120 gtgatggttttggataccgaaattaattatattacattaaaatgttcatattgatatgga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtgatggttttggataccgaaattaattatattacattaaaatgttcatattgatatgga 378
Query: 180 ccttataaatgattactaggataaaacatgtgacagtatgtcattgtaatagatcattat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccttataaatgattactaggataaaacatgtgacagtatgtcattgtaatagatcattat 438
Query: 240 attttttatttcaagcattttaccatgtcactgtaaccctgaaagtactgattaatagtg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 attttttatttcaagcattttaccatgtcactgtaaccctgaaagtactgattaatagtg 498
Query: 300 gagaaatcataatattttt--cagttctcataattcccacaatttaaaatgttgctatat 357
||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 499 gagaaatcataatttttttttcagttctcataattcccacaatttaaaatattgctatat 558
Query: 358 tctgcatcttaaaagcaaaaataaaatactgtggagatggcttggtgatgtaaagtcctt 417
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 559 tctgcatcttaaaagcaaaaataaaatgctggggagatggcttggtgatgtaaagtcctt 618
Query: 418 gctganaagctatgaggagctgaggtatcccctggaacccacataaatacagaagttata 477
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gctga-aagctatgaggagctgaggtatcccctggaacccacataaatacagaagttata 677
Query: 478 gcctgtaattgcagtcctaaaactctactgaga 510
|||||||||||||||||||||||||||||||||
Sbjct: 678 gcctgtaattgcagtcctaaaactctactgaga 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 911
Length adjustment: 10
Effective length of query: 500
Effective length of database: 901
Effective search space: 450500
Effective search space used: 450500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
