NAAAAAAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAG
GATCCGCGGAATTCCTGCTAGGTTTAGAGTCATAGGAATTCCGTGTGCTG
CCCCACCCTGCCAGTTAGACCTTTCAGAACAGCACTGCATTTCCTGATAG
TTAGGCTTGTTGCTGGTTCTTGGAAGGGAATAATTATTTGTCCCCAAACC
TTATTTCAAAAGGAATATACGTATGATAAAATTGTATATTCATTCATTCA
TTCATTCATTCATTCATTCATTCATTCATTCATTGTGGTGTTTTTCTTTA
GGGGCAGTTTGTTGACTGCCTCACATAGTATCATGTATAGGCACAATCAC
TTAGACCACCAGCAACTCTGCCATTGGGTCTTTCCATTTCTGTTTTGTGG
TCATGTCTCTTTGTCCACGGCAATGCTACAAAACACATAGAATTTGAGGA
AATAACACAGATGAGCTTCTAAGATTTCTCAGCCTTGGTGGCTTGGGAAC
ACAGCAAAGAGTACCGCAATGAACTGGAGGGTATCTTGGGGTGTGATGAG
GGTATGGGGGACAGGTGGTGAGTTCNNNNNNNGTGTTTTTTTTNGATGCT
TTGGGGTTNGGCNTCCCTCTGGGTCCCCTGATAGCCCCTCCGAAACCCAT
TATTTTGTTCCACCCGTACGGCCCCCTAATCCTTCTTTCACCTAACTCGG
GCCATAACCCTCGATATATGGTATCCTCTCTTATCAATCACAATGTTAAA
TATTCCGCTATCTC

TCTTTTTTCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTTTGTTTTGTC
ATGTAGAGCTGAAGCTTGACCTTTGCAGGTTAATTATTCTTGTGCAGAAG
TAAGACTTTTGCATGTACACTCTTCCTTGCCCTGTGATTTGAGGTTTTCT
AGTTTGGATAGCAGAAACAGACGCTGCCTTCAGTTGTGTGCATCAAATGC
TGTTGCCTCTGGTCTTCTTGGGTCCATCCCTAGACTCAGTGGTTTCCTCA
CATACACGTGCTGGTGCTATGGTGCTGGATAGTCTGTTCCATGCTCTCTC
GATATGCAGACTCTCCTCCCCATATCAATTCTCCACTGTTTGGTCATCTG
GCCTCTGAACTCCAAGCCTTGAGGTTCACTTGACACAGTTTCTGACCTGG
TAACAACTAGGAAACACTCAAAGCCAGAGCTGTGGTTCTTTTACTTGGGA
TTTCTATTGCTTTGACAAAACACCATGACCAAAGTAACTTGGGAGGTCAG
GATTTATTCAGCTGACACTTCCACAGCACTGTTCACCATTGAAGGAAGTC
AGGATAGGAACTCATATAATGCAGGATCCCCAGAAGGTGGTCCTGACAGA
AAATATAAAAGGGTGTTACTTACTGGCTTACTTCCCATGACTTGCTCAGC
TGGCTTTCTTATAAAACCCAAAACTCCTCGCCCAGGTGAG

Query= MSMg01no345_l18.b1 MSMg01no345_l18.b1 CHROMAT_FILE:
MSMg01no345_l18.b1 PHD_FILE: MSMg01no345_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:15 2005
         (489 letters)



>mm_chr4_8931581_8932469
          Length = 889

 Score =  845 bits (437), Expect = 0.0
 Identities = 463/481 (96%), Gaps = 16/481 (3%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattcctgctaggtttagagtcataggaattccgtgtgctgccccaccctgccagttag 68
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcctgctaggcttagagtcataggaattccgtgtgctgccccaccctgccagttag 268

                                                                       
Query: 69  acctttcagaacagcactgcatttcctgatagttaggcttgttgctggttcttggaaggg 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acctttcagaacagcactgcatttcctgatagttaggcttgttgctggttcttggaaggg 328

                                                                       
Query: 129 aataattatttgtccccaaaccttatttcaaaaggaatatacgtatgataaaattgtata 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aataattatttgtccccaaaccttatttcaaaaggaatatacgtatgataaaattgtata 388

                                                                       
Query: 189 ttcattcattcattcattcattcattcattcattcattcattcattgtggtgtttttctt 248
           |||||||||||||||||||||               || |||||||||||||||||||||
Sbjct: 389 ttcattcattcattcattcat---------------tt-attcattgtggtgtttttctt 432

                                                                       
Query: 249 taggggcagtttgttgactgcctcacatagtatcatgtataggcacaatcacttagacca 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 taggggcagtttgttgactgcctcacatagtatcatgtataggcacaatcacttagacca 492

                                                                       
Query: 309 ccagcaactctgccattgggtctttccatttctgttttgtggtcatgtctctttgtccac 368
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tcagcaactctgccattgggtctttccatttctgttttgtggtcatgtctctttgtccac 552

                                                                       
Query: 369 ggcaatgctacaaaacacatagaatttgaggaaataacacagatgagcttctaagatttc 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggcaatgctacaaaacacatagaatttgaggaaataacacagatgagcttctaagatttc 612

                                                                       
Query: 429 tcagccttggtggcttgggaacacagcaaagagtaccgcaatgaactggagggtatcttg 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tcagccttggtggcttgggaacacagcaaagagtaccgcaatgaactggagggtatcttg 672

            
Query: 489 g 489
           |
Sbjct: 673 g 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)