Query= MSMg01no345_o12.b1 MSMg01no345_o12.b1 CHROMAT_FILE:
MSMg01no345_o12.b1 PHD_FILE: MSMg01no345_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:27 2005
(527 letters)
>mm_chr4_122951372_122952300
Length = 929
Score = 634 bits (328), Expect = 0.0
Identities = 440/526 (83%), Gaps = 78/526 (14%)
Strand = Plus / Minus
Query: 5 gaattctccaaa-gtgacgtctttaggaaaccttgaagccatgtataaactgtgaaagcc 63
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gaattctccaaacg-gatgtctttaggaaaccttgaagccatgtataaactgtgaaagcc 425
Query: 64 actccctagctcttagccttgatttcctctatagtaaagcagaaataagatgagagacaa 123
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 424 actccctagctcttagccttgatttcctctataataaagcagaaataagatgagagacaa 365
Query: 124 tagataaaatttccacagagtcccag--acacagtgagcatccccaggacagcgggtaat 181
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 364 tagataaaatttccacagagtcccagacacacagtgagcatccccaggacagcgggtaac 305
Query: 182 gttgcgtgattacaatgtaacattttcatggatgctgtgagcagagaaataaacctggaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gttgcgtgattacaatgtaacattttcatggatgctgtgagcagagaaataaacctggaa 245
Query: 242 cttagatgagtctgggagagaacagcttgtgcctcctgaatgtgtgtgtgtgtactggat 301
| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 244 cctagatgagtctgggacagaacagcttgtgcctcctgaa-------------------- 205
Query: 302 gcatgtatgtagggcagtgtgtgtgtgtgtactggatgcatgtgcgtagggcagtgtgtg 361
||||||||||||||||||||||||||||||||||||
Sbjct: 204 -------------------tgtgtgtgtgtactggatgcatgtgcgtagggcagt----- 169
Query: 362 tgtgtgtactggatgcatgtatgtagggcagtgtgtgtgttcctatgttaaaacagaaaa 421
||||||||||||||||||||||||||||||
Sbjct: 168 ------------------------------gtgtgtgtgttcctatgttaaaacagaaaa 139
Query: 422 ctacaaagcagaatagagacttcacagagatcctgcgacaccacgccagagcctgacatt 481
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 138 ctacaaagcagaatagagacttcacagagatcctgcgacaccacgccagagtatgacatt 79
Query: 482 tccagaaatcatttctctagtgctattatttgaaaatgacgacaca 527
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 78 tccagaaatcattcctctagtgctattatttgaaaatgacgacaca 33
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 929
Length adjustment: 10
Effective length of query: 517
Effective length of database: 919
Effective search space: 475123
Effective search space used: 475123
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_o12.g1 MSMg01no345_o12.g1 CHROMAT_FILE:
MSMg01no345_o12.g1 PHD_FILE: MSMg01no345_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:28 2005
(394 letters)
>mm_chr4_122798773_122799567
Length = 795
Score = 723 bits (374), Expect = 0.0
Identities = 389/394 (98%), Gaps = 1/394 (0%)
Strand = Plus / Plus
Query: 1 ctgtggctacggaggtccctgtttctgtcacctcagacctgctggctggagtgcttgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtggctacggaggtccctgtttctgtcacctcagacctgctggctggagtgcttgggt 260
Query: 61 tggtctccagatgaggaaacaggttcataggtgtcatgccaccatccacaagtcaagtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtctccagatgaggaaacaggttcataggtgtcatgccaccatccacaagtcaagtcc 320
Query: 121 cccc-acctcccctctctgttgtctctgtcttccagggcacagcatagatcctggcctag 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccccacctcccctctctgttgtctctgtcttccagggcacagcatagatcctggcctag 380
Query: 180 ctggtctgcttggacgacaagcaccacgctccagacagcctttcatggttggtttcttca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggtctgcttggacgacaagcaccacgctccagacagcctttcatggttggtttcttca 440
Query: 240 gggccaacctgagtcctgtgcgggcccctcgaacagcaagaccactgaagaagaatcagc 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gggccaaccagagtcctgtgcgggcccctcgaacagcaagaccactgaagaagaagcagc 500
Query: 300 taaatcaaatcaaccagctgccgcactccaacaaacacctaggaacccttggtgagagca 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 taaatcaaatcaaccagctgccgcactccaacaaacacctaggaatccttggtgagagca 560
Query: 360 aggctgggatctgggtccttctttagagtggagt 393
||||||||||||||| ||||||||||||||||||
Sbjct: 561 aggctgggatctggggccttctttagagtggagt 594
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 795
Length adjustment: 9
Effective length of query: 385
Effective length of database: 786
Effective search space: 302610
Effective search space used: 302610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
