Query= MSMg01no346_c11.b1 MSMg01no346_c11.b1 CHROMAT_FILE:
MSMg01no346_c11.b1 PHD_FILE: MSMg01no346_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:46 2005
(482 letters)
>mm_chr4_109744588_109745469
Length = 882
Score = 843 bits (436), Expect = 0.0
Identities = 469/480 (97%), Gaps = 2/480 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagcctccacatcctaatagagacacacagtgtcttccattgtgtctgcttctc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggaattcagcctccacatcctaatagagacacacagtgtcttccattgtgtctgcttctc 547
Query: 64 ccatttgggctcctcaaggatgaaactagatcttattcatttcgaggacctcagagacca 123
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 546 ccatttgggctcctcaaggatgaaactagatcttattcattttgaggacctcggagacca 487
Query: 124 gcagggagcctgacacggagcaagcttccattggctgtcaattgggtggtgcctcaagca 183
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 486 gcagggagcctgacacggagcaagcttccattggttgtcaattgggtggtgccttaagca 427
Query: 184 ccacatatcatcctcctaaaaactaccctgtatttctcttctttgccacctctgttggca 243
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 426 ccacatatcatcctcctaaaaactaccctgtatttctcttctttgccacccctgttggca 367
Query: 244 aatgtccccatcactaactgatctggccactctctcctatcttcctgcaactggcctgtc 303
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 366 aatgtccccatcactagctgatctggccactctctcctatcttcctgcaactggtctgtc 307
Query: 304 tcactataaaccagcctggcctagatcccaccatcctatgaatacaacccaccctccatc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tcactataaaccagcctggcctagatcccaccatcctatgaatacaacccaccctccatc 247
Query: 364 acagctactgctgtgaccaccccaaaccttcag-tggcccaaagagacctgggttcagac 422
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 246 acagctactgctgtgaccaccccaaaccttcagct-gcccaaagagacctgggttcagac 188
Query: 423 tccagctcctctactccctagtttatagtgatgggaagccatgcagcatctgtaagtctc 482
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 187 tccagctcctctactccctagtttacagtgatgggaagtcatgcagcatctgtaagtctc 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_c11.g1 MSMg01no346_c11.g1 CHROMAT_FILE:
MSMg01no346_c11.g1 PHD_FILE: MSMg01no346_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:46 2005
(484 letters)
>mm_chr4_109560590_109561473
Length = 884
Score = 905 bits (468), Expect = 0.0
Identities = 480/484 (99%)
Strand = Plus / Plus
Query: 1 tagtggtttttaagacgacaaagaggccctgagactaagtttggaacctgacactctatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tagtggtttttaagacgacaaagaggccctgagactaagtttggaacctgacactctgtt 260
Query: 61 ttgtcagctttgcctcaactacattagctggttcctctttctgtctctgaccattgcgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtcagctttgcctcaactacattagctggttcctctttctgtctctgaccattgcgga 320
Query: 121 ggtgtgaagtgcctacaagctcagcttagcactggatcttccctgttagcattcatatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgtgaagtgcctacaagctcagcttagcactggatcttccctgttagcattcatatag 380
Query: 181 ctatagtgttttcccatttataatctgagcattttgtcctatagttccagaggggaagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ctatagtgttttcccatttataatctgagcattttgtcctatagttccagaggggaaatc 440
Query: 241 cataatgatgaggaagacatggcagtaggcattcagagtagcaagctagcaaatcatatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataatgatgaggaagacatggcagtaggcattcagagtagcaagctagcaaatcatatt 500
Query: 301 tttgcaacacatgaaacaaaacaaactggaagtagggcaaggttataaactctcaaagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgcaacacatgaaacaaaacaaactggaagtagggcaaggttataaactctcaaagca 560
Query: 361 tgccctcagttacatactttctttatcaaggctcttatcctaaccctatgcatcatcact 420
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 561 tgccctcagttacatactttctttttcaaggctcttatcctaaccctatgcatcattact 620
Query: 421 agcgggaccaagtattcaaactcaggatcctgtgcagacagttctcattcaaactaccac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcgggaccaagtattcaaactcaggatcctgtgcagacagttctcattcaaactaccac 680
Query: 481 gagt 484
||||
Sbjct: 681 gagt 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
