BAC Information

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BAC

Clone NameMSMg01-347C21
Chromosome4 (Build37)
Map Location 83,903,655 - 83,904,130
singlet/doubletsinglet
Overlap genenone
Upstream gene1810054D07Rik, Snapc3, Psip1, LOC100040611, 4930473A06Rik, LOC668010
Downstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347C21.T7 (MSMg01no347_c21.b1)MSMg01-347C21.TJ (MSMg01no347_c21.g1)
ACCAG459584AG459585
length778751
length of high quality
(start - end)		481 (49 - 529)524 (81 - 604)
definitionCHROMAT_FILE: MSMg01no347_c21.b1 PHD_FILE: MSMg01no347_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:04 2005CHROMAT_FILE: MSMg01no347_c21.g1 PHD_FILE: MSMg01no347_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATATTCTTCAGAGAGACTTGGGGAGTACACATGTATGTACA
CATTTCATACCCATACACATAAATCATATGAGCACGTGCATGCACATAGG
TGTACATGCATGCACATACACATAAAATAAAGTAAAAACTAAGCTTCATA
CTCATTTCCTCCATGCGCCTTTGCATTATAGAACAACTGTAGGGTGCACT
ATCTTTATCTATCTCACTTGCAATACATTCTTTCTCCTCTTGAACAATGG
TAGGCTTCAATATGTAGTTATTACCTTTTCTTTAAAATGGATATCATTGT
CACTTGCTGGCCAATGAGCAGACTACCTGTAGTCAGGAGTTCATGCCCCA
TCAGTCTCTGGCCAGTGTTATGAAAAAAATAACACATCATGACCTGTTAT
TGTAGTGCTCCAATAATGTACATTCAAGTTACTGATACTGCTTCATGGGC
CCCTGGCATACTGTGTAACTTTTTCTCAGTGTTGTTCAGATAGGATAATT
ACTAAGATCTGTCTCCAAGACNATGAATGACTCCTCTGTCATCCCCATTT
TACTACTCACTGATCCAGGGACAGTTTAATTATCTTAATGGACTGGGCCA
AAAGTTTTATTTGGGTCCCTTGGAAACTTCCCCAATATCCATTGAAAAGA
TTCCGGGGTTTTCTTTCCTTTCTAAAAAAATTGGCCCCACCACTGGGGCC
GGCCACAAAAGGGTTCTTTTTTCCAAAG

NNNNCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACCTGAGGAATACCGAAT
GGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTG
ATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAA
TTTGCTAAACACCTGAAACTCCAGAAAATGAAGACTGAATTGGGGACCCT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_c21.b1 MSMg01no347_c21.b1 CHROMAT_FILE:
MSMg01no347_c21.b1 PHD_FILE: MSMg01no347_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:04 2005
         (481 letters)



>mm_chr4_83903451_83904330
          Length = 880

 Score =  845 bits (437), Expect = 0.0
 Identities = 467/477 (97%), Gaps = 1/477 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatattcttcagagagacttggggagtacacatgtatgtacacatttcataccc 64
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatattcaagagagagacttggggagtacacatgtatgtacacatttcataccc 264

                                                                       
Query: 65  atacacataaatcatatgagcacgtgcatgcacataggtgtacatgcatgcacatacaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atacacataaatcatatgagcacgtgcatgcacataggtgtacatgcatgcacatacaca 324

                                                                       
Query: 125 taaaataaagtaaaaactaagcttcatactcatttcctccatgcgcctttgcattataga 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 taaaataaagtaaaaactaagcttcatactcatttcctccatgtgcctttgcattataga 384

                                                                       
Query: 185 acaactgtagggtgcactatctttatctatctcacttgcaatacattctttctcctcttg 244
           ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 acaactgtagggtacactatctttatctatctcacttgctatacattctttctcctcttg 444

                                                                       
Query: 245 aacaatggtaggcttcaatatgtagttattaccttttctttaaaatggatatcattgtca 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 aacaatggtaggcttcaatatgtagttatcaccttttctttaaaatggatatcattgtca 504

                                                                       
Query: 305 cttgctggccaatgagcagactacctgtagtcaggagttcatgccccatcagtctctggc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttgctggccaatgagcagactacctgtagtcaggagttcatgccccatcagtctctggc 564

                                                                       
Query: 365 cagtgttatgaaaaaaataacacatcatgacctgttattgtagtgctccaataatgtaca 424
           |||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 565 cagtgttatgaaaaaa-taacacatcatgacctgttactatagtgctccaataatgtaca 623

                                                                    
Query: 425 ttcaagttactgatactgcttcatgggcccctggcatactgtgtaactttttctcag 481
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcaagttactgatactgcttcatgggcccctggcatactgtgtaactttttctcag 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 880
Length adjustment: 10
Effective length of query: 471
Effective length of database: 870
Effective search space:   409770
Effective search space used:   409770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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