Query= MSMg01no347_j19.b1 MSMg01no347_j19.b1 CHROMAT_FILE:
MSMg01no347_j19.b1 PHD_FILE: MSMg01no347_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:38 2005
(459 letters)
>mm_chr4_62612601_62613459
Length = 859
Score = 714 bits (369), Expect = 0.0
Identities = 439/471 (93%), Gaps = 16/471 (3%)
Strand = Plus / Plus
Query: 4 ggaattctgctcattgccttggcaaatagataaaaatcaccacacactagaatttaacag 63
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 204 ggaattctgcttattgccttggcaaatagataaaaaccaccacacactagaatttaacag 263
Query: 64 actctaagtccatacaactctatgaacttctttatagttaagaattggcattggaataga 123
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 actctaaatccatacaactctatgaacttctttatagtt-agaattggcattggaatagg 322
Query: 124 aactacgaac-ttcacattaaacttcataatttcatcattgtatatattttatgcaccta 182
|||| | ||| || ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 323 aactgcaaacttttacattaaacttcataatttcatcattgcatatattttatgcaccta 382
Query: 183 ttcacaggtagtgaacatgggtaataaaggaggttataaagctaattattcttctaggtt 242
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 383 ttcacaggtagtgaacatgggtaataaaggaggctataaagctaattattcttctaggtt 442
Query: 243 taattctgtcctg--------------tgtgtgtgtgtgtgtgtgtgtgtgtgcgcacat 288
|||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 443 taattctgtcgtgtgtgtgtgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgcacat 502
Query: 289 gtgtatacatgtatctatgaatgtggtgggggtggattagctacttgccttatacatacc 348
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 503 gtgtatacatgtatctatgaatgtggtgggggtggattagctacctgccttatacatacc 562
Query: 349 aggcccagtcacatagggatgtttctgctcatagtgggcttggtcctccttcatcaattg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aggcccagtcacatagggatgtttctgctcatagtgggcttggtcctccttcatcaattg 622
Query: 409 gtagcccaagaacatgtccatggatgtatccacaggccattccaatgaaag 459
|||||| ||||| ||| |||||||||||||||||||||| |||||||||||
Sbjct: 623 gtagcctaagaaaatgcccatggatgtatccacaggccagtccaatgaaag 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_j19.g1 MSMg01no347_j19.g1 CHROMAT_FILE:
MSMg01no347_j19.g1 PHD_FILE: MSMg01no347_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:38 2005
(192 letters)
>mm_chr4_62747586_62748177
Length = 592
Score = 358 bits (185), Expect = e-103
Identities = 188/189 (99%)
Strand = Plus / Minus
Query: 1 ctgcagggaaggaccgaggtcataaacacgggtggctgtggggcgctccttcttctgtgt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctgcagggaaggactgaggtcataaacacgggtggctgtggggcgctccttcttctgtgt 330
Query: 61 ctgtgatccagaggaagtgctgctcaaatgtttcagagtgtagaccaccagatgtccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctgtgatccagaggaagtgctgctcaaatgtttcagagtgtagaccaccagatgtccaga 270
Query: 121 tgtcctgctatccctgagggtggactcaagatctgctcacaatggctggatggggtgtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgtcctgctatccctgagggtggactcaagatctgctcacaatggctggatggggtgtgg 210
Query: 181 gggagggtg 189
|||||||||
Sbjct: 209 gggagggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space: 107456
Effective search space used: 107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
