Query= MSMg01no347_m14.b1 MSMg01no347_m14.b1 CHROMAT_FILE:
MSMg01no347_m14.b1 PHD_FILE: MSMg01no347_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:52 2005
(498 letters)
>mm_chr4_66864134_66865031
Length = 898
Score = 932 bits (482), Expect = 0.0
Identities = 491/494 (99%)
Strand = Plus / Plus
Query: 5 gaattcataattactaaaatcttaccaggaaggcaagatatgaaatcttatttcttattt 64
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattcataattactaaaatcttaccaggaaggcaagatgtgaaatcttatttcttattt 264
Query: 65 tattttaaaatacaggcaaaataatagttatagtgattaaatctcattcactgtaaaaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattttaaaatacaggcaaaataatagttatagtgattaaatctcattcactgtaaaaga 324
Query: 125 ttaattagtagcactggtttcaatataaataatttattatgagaaattgaatgctagcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaattagtagcactggtttcaatataaataatttattatgagaaattgaatgctagcaa 384
Query: 185 ttgagccaagtgccttagaatcattatttgatttaatcctcacaatgaactgactattat 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgagccaagtgccttaaaatcattatttgatttaatcctcacaatgaactgactattat 444
Query: 245 tatcctcattttccagataataaacctaagccttgaataagtcaaaaaagttatgcaaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatcctcattttccagataataaacctaagccttgaataagtcaaaaaagttatgcaaag 504
Query: 305 ctacacagacaatatgtaacagaagtggtttttaagctagttatgacattaaatctttcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctacacagacaatatgtaacagaagtggtttttaagctagttatgacattaaatctttcc 564
Query: 365 tgtatgagcctttctgtgatgttttattgaatatccactagcacagggatgctgttgtag 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 tgtatgagcctttctgtgatgttttattgaatatccactagcacagggatgctgttttag 624
Query: 425 acactgaacattaaagattgttattttacaaataatgtggaatgccagagtatcaaaaac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acactgaacattaaagattgttattttacaaataatgtggaatgccagagtatcaaaaac 684
Query: 485 tagagtaaaaagct 498
||||||||||||||
Sbjct: 685 tagagtaaaaagct 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_m14.g1 MSMg01no347_m14.g1 CHROMAT_FILE:
MSMg01no347_m14.g1 PHD_FILE: MSMg01no347_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:52 2005
(484 letters)
>mm_chr4_67054350_67055233
Length = 884
Score = 874 bits (452), Expect = 0.0
Identities = 476/484 (98%), Gaps = 1/484 (0%)
Strand = Plus / Minus
Query: 1 tcagcctgtaggtcaggacccctttggaagtgctacatatctgatatcctgcatatcaga 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 787 tcagcctgtaggtcaggacccctttggaagtgctacatatcagatatcctgcatatcaga 728
Query: 61 tatttaaaataaattcataacactaacaaaattacagttattaaccaacaacaaaaataa 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tattt-aaataaattcataacactaacaaaattacagttattaaccaacaacaaaaataa 669
Query: 121 ttttatgtttggaatcaccacaataggaagaatgtaattaagggtcaattcaatagaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ttttatgtttggaatcaccacaataggaagaatgtaattaagggtcaattcaatagaaaa 609
Query: 181 gttgagaatgattgttctattgcataagagcagagaaaattgattcattctagctttcag 240
||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 608 gttgagaatgaatgttctattgcataagagcagaaaaaattgattcattttagctttcag 549
Query: 241 aggaaagtcagtattttcaggtttggtagattactggctgtagcctgatcctaagtagcc 300
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 548 aggaaagtcagtattttcaggtttggtagatcactggatgtagcctgatcctaagtagcc 489
Query: 301 tttaatgtattgaggtgtcttccttctgattatttaatgaaagtgttcaaaactctaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tttaatgtattgaggtgtcttccttctgattatttaatgaaagtgttcaaaactctaaaa 429
Query: 361 tttcctcttatagtatttttgctccatttctatatgttttagtcagggttctttagaatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tttcctcttatagtatttttgctccatttctatatgttttagtcagggttctttagaatc 369
Query: 421 agagtacatcttgaatatctctaaatattaaggtaatttgttggaatgatgtacagtctg 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agagaacatcttgaatatctctaaatattaaggtaatttgttggaatgatgtacagtctg 309
Query: 481 cagt 484
||||
Sbjct: 308 cagt 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
