Query= MSMg01no348_h19.b1 MSMg01no348_h19.b1 CHROMAT_FILE:
MSMg01no348_h19.b1 PHD_FILE: MSMg01no348_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:47 2005
(528 letters)
>mm_chr4_83874879_83875806
Length = 928
Score = 770 bits (398), Expect = 0.0
Identities = 412/418 (98%), Gaps = 4/418 (0%)
Strand = Plus / Minus
Query: 5 gaattcagttgttc--acttgcctcaggcctgacaggaagaactcaacaccacttccact 62
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gaattcagttg--caaacttgcctcaggcctgacaggaagaactcaacaccacttccact 359
Query: 63 cagcccaccccaccttcaggtctgaacagtccggtccctccatttcctctgacaagggtc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cagcccaccccaccttcaggtctgaacagtccggtccctccatttcctctgacaagggtc 299
Query: 123 ttctgtctacggttttctttacagtgtttgctttggtgccctgcctctggctttcattat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttctgtctacggttttctttacagtgtttgctttggtgccctgcctctggctttcattat 239
Query: 183 ctcttatctgtgctattgtaatagcctctgaacagagagaagcctgggatttagaatcag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 238 ctcttatctgtgctattgtaatagcctctgaacagagagaagcctgggatttagagtcag 179
Query: 243 atggatctgaatttgatcttgactctactgcttatgtgcagtttaacccttgggcaaatg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 atggatctgaatttgatcttgactctactgcttatgtgcagtttaacccttgggcaaatg 119
Query: 303 tctggatctgttggatttcaatttccttatctgtacagaatggaaaacagtaccttatct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 118 tctggatctgttggatttcaatttccttatctgtacagaatggaaaacagtacattatct 59
Query: 363 cataggtgtgtgagggtagaatggaagcatctacagcaagtgcctagcacagggtcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 cataggtgtgtgagggtagaatggaagcatctacagcaagtgcctagcacagggtcac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_h19.g1 MSMg01no348_h19.g1 CHROMAT_FILE:
MSMg01no348_h19.g1 PHD_FILE: MSMg01no348_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:47 2005
(495 letters)
>mm_chr4_83701692_83702585
Length = 894
Score = 911 bits (471), Expect = 0.0
Identities = 489/495 (98%), Gaps = 1/495 (0%)
Strand = Plus / Plus
Query: 1 acagtacaaagtacaatcaagattaggtggccgtagttggagggatcctcctgattctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtacaaagtacaatcaagattaggtggccgtagttggagggatcctcctgattctgc 260
Query: 61 cttccaaatgccagccttcagactacaactgtgcctgtaacatttggctttcacatgggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 cttccaaatgccagccttcagactacaactgtgcctgtaacatttggcttttacatgggc 320
Query: 121 tatgggagtcagacatgtgtcataaatgctattttctatcacagtaaatcatttttgctt 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgggagtcagaaatgtgtcataaatgctattttctatcacagtaaatcatttttgctt 380
Query: 181 caaaaaattttagttcagaaactttaggtaggtgtgtttaggcatgtgtctattctctga 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaaa-ttttagttcagaaactttaggtaggtgtgtttaggcatgtgtctattctctga 439
Query: 241 tgattagaaaaatctcttcctaacctgctgggcactaagccctgtctccttccaaatgca 300
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 tgaagagaaaaatctcttcctaacttgctgggcactaagccctgtctccttccaaatgca 499
Query: 301 agggttttcaaagccagtggatttcttcccattccttcagactgtacctctctttcttcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agggttttcaaagccagtggatttcttcccattccttcagactgtacctctctttcttcc 559
Query: 361 tgttggcttcctggatttgtcttccatggcatttaagttttactcaccctgtgctgtctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgttggcttcctggatttgtcttccatggcatttaagttttactcaccctgtgctgtctt 619
Query: 421 tatacattctctctatcttcagatgtgttttgcccatctcctcttccatgccattatctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatacattctctctatcttcagatgtgttttgcccatctcctcttccatgccattatctg 679
Query: 481 agagctcatcatggt 495
|||||||||||||||
Sbjct: 680 agagctcatcatggt 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 894
Length adjustment: 10
Effective length of query: 485
Effective length of database: 884
Effective search space: 428740
Effective search space used: 428740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
