BAC Information

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BAC

Clone NameMSMg01-348I09
Chromosome4 (Build37)
Map Location 145,740,273 - 145,740,515
singlet/doubletsinglet
Overlap geneLOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348I09.T7 (MSMg01no348_i09.b1)MSMg01-348I09.TJ (MSMg01no348_i09.g1)
ACCAG460599AG460600
length725756
length of high quality
(start - end)
490 (37 - 526)243 (67 - 309)
definitionCHROMAT_FILE: MSMg01no348_i09.b1 PHD_FILE: MSMg01no348_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:50 2005CHROMAT_FILE: MSMg01no348_i09.g1 PHD_FILE: MSMg01no348_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAG
GTTTCCGGATGCATCTGGAGGATATCATCCTGAGTGAGATAATCCAATCA
CAAAAAACCATACATGATATGCACTCACTGAAAAGCAGATATTAGCCCAG
AAACTTAGAATATCCAAGATATAATTTGCAAAGCATGCAAAACACAAAAA
GAAGGAAGACCCAAGTGTGGATACTTAGATCGTTCTTAGAAGGAGGTACA
AAATATCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACTGAA
GGAAGGACCATCCAGAGACTGCCCCACCCGGGGATCCATCCCCAAAACAA
CCACCACACCCAGAGACTATTGCAGATGTCAACAAGAGTTTGCTGGCAGG
ACCCAAATACAGCTGTCCTCTGTGAGGATATGCCAGTGCCTAGCAAATAC
AGAAGTGGATGTTCACAGTCATCAATTGGATGGAGCACAGAGTCCCCAAT
GAAGGAGCTAGAGAAAGCACCCAAGGAGCTGAAGGGGTCTGCAGCCCTAT
AGGAGGAACAACAATATGAACTAATCAGTAACCCCAGAGCTCCCTGGGAC
TAAACCACCAGTCAAAGAAAACAAGGTTGCACCTTGCGTCCCTACCCGTT
AACGTCACCGTGACGGTCTATTCCGTCATCCTTGCCAAGTAAAGGCCCTT
GCCCTTGCATATGTTCTATGCCCCN
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTCATAAACTTAATGATTAGCAGGCTTCTGACA
TGATTGAGGGCTCTATCGATTGGCTATAACCGAATAGAATTTAATGGCAG
TAGGAAAAATCATCATCTTCCAAGACAGGCTGGGAAGGAGACTCTTAAGT
CACGTTGACAGGCTGTGTAAGGAGAGAAAAGTACCTTTTGTATTAGCAAA
GAAACTCGTGTCTAGGAACAGAATAAGAGCTGACAGCAGTGGGTTGAGAT
TGAATTGTGCTGTCTAGGCAAGCCGTGAGAATGGCTTGTCTGTAGAGTGA
GGGACTGGCTGGCACACACCTGTAGTGGGAGTGGAAAGTGAAACACCTGA
AGTAGCATGTTTTGTATCCCAGCAACATGCATGCCATTCTTGTGGAGTCA
CTAGCCTTCACTTTATAAATCCTGGGCAGAGAGGGTATGAGAGAAAGAGG
GAGGGAGGGAGGTCCTCTCCTCTTTGTCCCCCTTTTTTTCTTTCCTCCCC
TCGCCCGTTACTCATCCATCGCCTTCTTTCTTCTCCCCCCGTCTGCTTCT
TTTGTAATATTACCCCTTCTCCCCTCCACTATACGAATCTACCTAAAACT
ATCTCCATTCATTTTTCTTCCCTTCCTCCTACCCTTTTTTTTTTTCCCTT
CCCTCCTCTCACTCTTTTCCCTCCCCCCTCCCGTATTTTTATTCCTATTT
CTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_i09.g1 MSMg01no348_i09.g1 CHROMAT_FILE:
MSMg01no348_i09.g1 PHD_FILE: MSMg01no348_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:50 2005
         (243 letters)



>mm_chr4_145740073_145740715
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcataaacttaatgattagcaggcttctgacatgattgagggctctatcgattggcta 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 443 tgtcataaacttaatgattagcaggtttctgacatgattgagggctctatcgattggcta 384

                                                                       
Query: 61  taaccgaatagaatttaatggcagtaggaaaaatcatcatcttccaagacaggctgggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 383 taaccgaatagaatttaatggcagtaggaaaaatcatcatcttccaagacaggctggaaa 324

                                                                       
Query: 121 ggagactcttaagtcacgttgacaggctgtgtaaggagagaaaagtaccttttgtattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggagactcttaagtcacgttgacaggctgtgtaaggagagaaaagtaccttttgtattag 264

                                                                       
Query: 181 caaagaaactcgtgtctaggaacagaataagagctgacagcagtgggttgagattgaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caaagaaactcgtgtctaggaacagaataagagctgacagcagtgggttgagattgaatt 204

              
Query: 241 gtg 243
           |||
Sbjct: 203 gtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)