BAC Information

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BAC

Clone NameMSMg01-348N14
Chromosome4 (Build37)
Map Location 111,561,526 - 111,561,763
singlet/doubletsinglet
Overlap geneSlc5a9
Upstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612
Downstream geneLOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348N14.T7 (MSMg01no348_n14.b1)MSMg01-348N14.TJ (MSMg01no348_n14.g1)
ACCAG460846AG460847
length713729
length of high quality
(start - end)
568 (61 - 628)238 (73 - 310)
definitionCHROMAT_FILE: MSMg01no348_n14.b1 PHD_FILE: MSMg01no348_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:17 2005CHROMAT_FILE: MSMg01no348_n14.g1 PHD_FILE: MSMg01no348_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCATTTCACGAAAACCAAATGGCTGAGAAGCACCTGAAAAAAATGTCCA
ACATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAATCAGAATGGCTAAGATCAAAAAATTCAGGAAACAGCAGA
TGCTGGTGAGGATATGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGA
TTGCAAGCTGGTACAACCACTCTGGAAATCAGTTTGGTGGTTCCTCAGAA
AATTGGACATAGTACTACCGGAGGATCCTGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGTTCCAACTGGTAATAAGGACACATGCTCCACTGTGTT
CATAGCAGCCTTATTTGTAATAGCCAGAAGCTGGAAAGAACCCAGATGTC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTATATTTACACAATGGAG
TACTACTCAGCTATAAAAAACAATGAATGTATGAAATTCTTACGCAAATG
GATGGATCTGGAGGATATCATCCTGAATGAGGTAACCCAATCACAAAAGA
ACTCACATGATATGTACTCACTGATAAATGGATATTAGCCCAGAAACTTA
CAATACCCAAGACACAATTTGCAAAACACATGAAACTCCCGAATATAGAC
CAAAGTGTGCATA
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCAGTGTTCCAGATAAGGAACACTGAT
GACTTGACCAGACCAGTGGTTTTAGAGATGAAGAAAAAGCATTCGAAGAC
ATTGGTGAAGTAATACTGGCACAATTTGATTACACAGTATTCATTAGTAA
CTAGAAAGACATAACCAAAGATGGTTCCAATTCTTGATCTTCAGAGGTGA
TATTTCGTCAAGGAACTGGAAGGCAGTATATGAGCAGTTGTTGCTTCCCT
TTAGTAGTTACTTTCTGTCTGAGAAACAGCAGAGATAATGAAGGTCCACC
TAAGGCCAAGTAGTTAACAAAAAGAAGGAAGGGGAAGAAATGAGAGAAGG
GTCTAGGATAATGCTGATATCTGAGGGAAAACAATAAGCCATTATTAGCC
TGAGGGAAGCAAAGAACTGAGGAAGACACCTCAGTTTGGGACCTTTGAGC
ACTCAAGTGCTCTCAAGGCGTCCAGGGAGACACTAAGACTTGATTAAACA
TGCACATTTGAGGAAAAGAGGCCCTGGGTGTGTTGGACAACTACCGAGAC
TGGGGTCATCCCCCCAATGTTGAAAGGTCTTTCCAGAACCTTGACCTTAT
TATGTTAGACTTTACATATTAGTACACCCTCTAACATTTCCTTTTGTCCA
GGGAAAAAAAATGGAAAACCATTTTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_n14.g1 MSMg01no348_n14.g1 CHROMAT_FILE:
MSMg01no348_n14.g1 PHD_FILE: MSMg01no348_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:17 2005
         (238 letters)



>mm_chr4_111561326_111561963
          Length = 638

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcagtgttccagataaggaacactgatgacttgaccagaccagtggttttagagatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgcagtgttccagataaggaacactgatgacttgaccagaccagtggttttagagatgaa 379

                                                                       
Query: 61  gaaaaagcattcgaagacattggtgaagtaatactggcacaatttgattacacagtattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaaaaagcattcgaagacattggtgaagtaatactggcacaatttgattacacagtattc 319

                                                                       
Query: 121 attagtaactagaaagacataaccaaagatggttccaattcttgatcttcagaggtgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 attagtaactagaaagacataaccaaagatggttccaattcttgatcttcagaggtgata 259

                                                                     
Query: 181 tttcgtcaaggaactggaaggcagtatatgagcagttgttgcttccctttagtagtta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttcgtcaaggaactggaaggcagtatatgagcagttgttgcttccctttagtagtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)