BAC Information

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BAC

Clone NameMSMg01-349A19
Chromosome4 (Build37)
Map Location 73,246,582 - 73,468,243
singlet/doubletdoublet
Overlap geneOTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768
Upstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698, OTTMUSG00000001246, LOC100039726, LOC667722, LOC623115
Downstream geneLOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c, LOC100040258, LOC100039814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349A19.T7 (MSMg01no349_a19.b1)MSMg01-349A19.TJ (MSMg01no349_a19.g1)
ACCAG460998AG460999
length754757
length of high quality
(start - end)		646 (47 - 692)514 (75 - 588)
definitionCHROMAT_FILE: MSMg01no349_a19.b1 PHD_FILE: MSMg01no349_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:33 2005CHROMAT_FILE: MSMg01no349_a19.g1 PHD_FILE: MSMg01no349_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,246,582 - 73,247,227)(73,467,852 - 73,468,243)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CCTGTGATATGCATAATTACTTCCCAATCTCAAGTGGCAATTTGTGATTA
TTGCTTCTGTCAGGACAACAAATATGGAAACAGATACAGACATGGCAGTA
ATTAAGAGGAGGTGCAGTAAAAGAAGTTTTCAAACCATACCACCATTCAG
TTTTTCTTTTATGTCTCTGTCTTGTGATGGCCTGCCTGGGCAATTCAGAC
TCCAGTTTCCTCCTGGGTTTTTTACAACTTGGTGATTACTTCCTCACGTG
CTATAGTCTCCAGAATGAATATGTAATTGAGAGCCTAAGTTACCATCCAG
AAGTTCAAGGCATCTTTGTAGATTTCATTTTATTCTTTTAGCCCTTCTTA
TTCTCAATCTGTTACCATTTATGTACAGTGATTCTGTACTGTTCTTTCAT
TTAGTACCTCTGAGATAATTCTGTGCTTCTAACTGACCCTCAGCTTAAAT
TCTGACTTACAAATTTTCATTTCTGTCTTTTCTCCCATATTGAACATATA
TTCCAGGCCCCTTTCAATGCTTTTATCATATGGCTGTTAATGTTAAATTA
ATTAATGATATATATGAAGTAGACACACACAAAAGCAAACACACACAAGT
GAACACGTACACATATTAATAAATTTACCTTGCACTATATGGTTGAGAGT
TTTACAAGGAAAGCTCAGAAGATTCCTATCCCCTCCTCTGTGTATCTTTC
TCTC

AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCACTCACTGCCTTCTCAGATTAC
TGTCTCTTAAAGAAGAAGTTAAAAATTTTAAAGTAGAAATAAATAAATAT
CCCAGATTATCTAGAACTCTAATAGACATGACCTCAGGAGTTGAGACCCT
AGGTCTACATATGAGACTGTTGGAGCTGGCTGCATGGGTGGCTAAACTGT
TAAAGGCTAGGCTCATCACGGGGTCCCCAATGAAGGAGCTAGAGAAAGGA
CCCAAGGAGCTGAAGGGGTTTTCAGTCCCCTAGGAAAAACAACAATATGA
ACTAACTAGTACCCCCAGAGCTCCAAGGGACTAAACCACCAAACAAAGAG
TATACATGGTGGTACTCATGGCTCCAGCTGCATATGTAGGAGAGGATGGC
CTAGTCAGTCATCAATGGGAGGAGAGGCCTGTGGTCCTGTGAAGGCTCTA
TGCCTCAGTGTAGGGGAAAAACAGGGCCAGGAGGCAGGAGTGGATGGATT
GGTGAGCAGGGGTTAGGGGGTAATGGGGGTAGGGAGTNNNNNNNNNNNNN
NNNTTTNNNNNTTNNNNTTNNNTTTTNNTTNTTTTTTTTTTTNNNNTTTT
TTTTTTTTTTTTNTCTTTTTTTTTTTTTTTTTTTTTTTTTTCNTTTNTTT
TTTTTTTTTTTTTTCCCTTTTTTCCCCCTTTTCTCTTCCTTTCTTCTCCC
TTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_a19.b1 MSMg01no349_a19.b1 CHROMAT_FILE:
MSMg01no349_a19.b1 PHD_FILE: MSMg01no349_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:33 2005
         (646 letters)



>mm_chr4_73246382_73247427
          Length = 1046

 Score = 1218 bits (630), Expect = 0.0
 Identities = 642/646 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcacctgtgatatgcataattacttcccaatctcaagtggcaatttgtgattattgctt 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcacctgtgacatgcataattacttcccaatctcaagtggcaatttgtgattattgctt 260

                                                                       
Query: 61  ctgtcaggacaacaaatatggaaacagatacagacatggcagtaattaagaggaggtgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtcaggacaacaaatatggaaacagatacagacatggcagtaattaagaggaggtgca 320

                                                                       
Query: 121 gtaaaagaagttttcaaaccataccaccattcagtttttcttttatgtctctgtcttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaaagaagttttcaaaccataccaccattcagtttttcttttatgtctctgtcttgtg 380

                                                                       
Query: 181 atggcctgcctgggcaattcagactccagtttcctcctgggttttttacaacttggtgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggcctgcctgggcaattcagactccagtttcctcctgggttttttacaacttggtgat 440

                                                                       
Query: 241 tacttcctcacgtgctatagtctccagaatgaatatgtaattgagagcctaagttaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacttcctcacgtgctatagtctccagaatgaatatgtaattgagagcctaagttaccat 500

                                                                       
Query: 301 ccagaagttcaaggcatctttgtagatttcattttattcttttagcccttcttattctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagaagttcaaggcatctttgtagatttcattttattcttttagcccttcttattctca 560

                                                                       
Query: 361 atctgttaccatttatgtacagtgattctgtactgttctttcatttagtacctctgagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctgttaccatttatgtacagtgattctgtactgttctttcatttagtacctctgagat 620

                                                                       
Query: 421 aattctgtgcttctaactgaccctcagcttaaattctgacttacaaattttcatttctgt 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 aattctgtgcttctaactgaccctcagcttaaattccgacttacaaattttcatttctgt 680

                                                                       
Query: 481 cttttctcccatattgaacatatattccaggcccctttcaatgcttttatcatatggctg 540
           |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 681 cttttctcccatattgaacatagattccaggcccctttcaatgcttttatcttatggctg 740

                                                                       
Query: 541 ttaatgttaaattaattaatgatatatatgaagtagacacacacaaaagcaaacacacac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaatgttaaattaattaatgatatatatgaagtagacacacacaaaagcaaacacacac 800

                                                         
Query: 601 aagtgaacacgtacacatattaataaatttaccttgcactatatgg 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagtgaacacgtacacatattaataaatttaccttgcactatatgg 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no349_a19.g1 MSMg01no349_a19.g1 CHROMAT_FILE:
MSMg01no349_a19.g1 PHD_FILE: MSMg01no349_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:33 2005
         (514 letters)



>mm_chr4_73467852_73468765
          Length = 914

 Score =  735 bits (380), Expect = 0.0
 Identities = 389/392 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcactcactgccttctcagattactgtctcttaaagaagaagttaaaaattttaaagt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 392 attcactcactgccttctcagattattgtctcttaaagaagaagttaaaaattttaaagt 333

                                                                       
Query: 61  agaaataaataaatatcccagattatctagaactctaatagacatgacctcaggagttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agaaataaataaatatcccagattatctagaactctaatagacatgacctcaggagttga 273

                                                                       
Query: 121 gaccctaggtctacatatgagactgttggagctggctgcatgggtggctaaactgttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gaccctaggtctacatatgagactgttggagctggctgcatgggtggctaaactgttaaa 213

                                                                       
Query: 181 ggctaggctcatcacggggtccccaatgaaggagctagagaaaggacccaaggagctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ggctaggctcatcacggggtccccaatgaaggagctagagaaaggacccaaggagctgaa 153

                                                                       
Query: 241 ggggttttcagtcccctaggaaaaacaacaatatgaactaactagtacccccagagctcc 300
           ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 152 ggggtttgcagtcccctaggaagaacaacaatatgaactaactagtacccccagagctcc 93

                                                                       
Query: 301 aagggactaaaccaccaaacaaagagtatacatggtggtactcatggctccagctgcata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  aagggactaaaccaccaaacaaagagtatacatggtggtactcatggctccagctgcata 33

                                           
Query: 361 tgtaggagaggatggcctagtcagtcatcaat 392
           ||||||||||||||||||||||||||||||||
Sbjct: 32  tgtaggagaggatggcctagtcagtcatcaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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