Query= MSMg01no349_i10.b1 MSMg01no349_i10.b1 CHROMAT_FILE:
MSMg01no349_i10.b1 PHD_FILE: MSMg01no349_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:09 2005
(595 letters)
>mm_chr4_124409213_124410207
Length = 995
Score = 1091 bits (564), Expect = 0.0
Identities = 588/596 (98%), Gaps = 3/596 (0%)
Strand = Plus / Plus
Query: 1 cagagccattccttttcaggaagaatatgaagactccagtggaaatgttgtgaacaagaa 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagccataccttttcaggaagaatatgaagactccagtggaaatgttgtgaacaagaa 260
Query: 61 gacatacgaggatctgaaaagacaagggctgctctagtgctcggttccctgagaagcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacatacgaggatctgaaaagacaagggctgctctagtgctcggttccctgagaagcctg 320
Query: 121 agaaaagcttccccaaccaaatgttcttaaagactttttgctatgtagtatctaccttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaagcttccccaaccaaatgttcttaaagactttttgctatgtagtatctaccttgt 380
Query: 181 agaaaccttgcagattgcagagttgagatgtgttttatctttgttttatattaaaaagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaccttgcagattgcagagttgagatgtgttttatctttgttttatattaaaaagat 440
Query: 241 ctgtgggaaaataaagccagcccttgttttggatgtgctgtttctgaaacccaggtttat 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 441 ctgtgggaaaataaagccagcccttgttttggatgtgttgtttctgaaacccaagtttat 500
Query: 301 gaattttttgtttttcttttttgagacagggtttctctgtatagccctggcttgtcctgg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 gaattttttgtttttcttttttgagacagggtttctctgtatagccctggct-gtcctgg 559
Query: 361 aactcactttgtagatcaggttggactcaaactcagaaatccacctgcctctgcctccca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aactcactttgtagatcaggttggactcaaactcagaaatccacctgcctctgcctccca 619
Query: 421 agtgctgggattaaaggtgtgtgccaccaccacccacccagcccaggtttatgaagtaac 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 620 agtgctgggattaaaggtgtgtgccaccaccacccacccagcctaggtttatgaagtaac 679
Query: 481 ttcgtcctttttgttctt-tttttttttaatatttaatgtatgtgagtacactgttgctg 539
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcgtcctttttgtt-ttgtttttttttaatatttaatgtatgtgagtacactgttgctg 738
Query: 540 tcttcatacacaccagaagagggcatctgaccccattactgatggttgtgagccac 595
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 739 tcttcatacacaccagaagagggcatctgatcccattactgatggttgtgagccac 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_i10.g1 MSMg01no349_i10.g1 CHROMAT_FILE:
MSMg01no349_i10.g1 PHD_FILE: MSMg01no349_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:09 2005
(570 letters)
>mm_chr4_124490542_124491511
Length = 970
Score = 1002 bits (518), Expect = 0.0
Identities = 550/570 (96%), Gaps = 15/570 (2%)
Strand = Plus / Minus
Query: 1 atccgtccctcactctccagggctgtgttgatacctcatccctccacccgtgcagaacta 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 727 atccgtccctcactctccagggctgtgttgatacctcatccctctacccgtgcagaacta 668
Query: 61 aggacacccacttgccctttcatttttcagccctggtatcagcagacaaggctacatctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aggacacccacttgccctttcatttttcagccctggtatcagcagacaaggctacatctt 608
Query: 121 gacctttgtagacttctgtgctatcataaaaagcaatgacttcagcatcagacagtcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gacctttgtagacttctgtgctatcataaaaagcaatgacttcagcatcagacagtcctc 548
Query: 181 agttcaagtctcagcttcaccacttgaaaggtggatacttctatttgtaagtgtgtgttc 240
||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 547 agttcaagtctcagcttcacc---------------acttctatttgtaagtgtgtgctc 503
Query: 241 atggggcatgtgtatatgagggtgtgtgcacttgtgtgtgagcaagcacaagacagaagc 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atggggcatgtggatatgagggtgtgtgcacttgtgtgtgagcaagcacaagacagaagc 443
Query: 301 tgacctcaagtattgtttgtcttctatcttatttatttacagagtcttactatgtgtccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgacctcaagtattgtttgtcttctatcttatttatttacagagtcttactatgtgtccc 383
Query: 361 aggctggcctcaaactcacagagattttcctgcttctgactctaagcgctgggattaaag 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 aggctggcctcaaactcacagagattttcctgcttctgcctctaagcgctgggattaaag 323
Query: 421 gcgtgagccaccacacccggccttatggagttctcagactctacagccagagaacactta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcgtgagccaccacacccggccttatggagttctcagactctacagccagagaacactta 263
Query: 481 gggacactcccccgtctctttaagaatttaacatctaaaagtgtctattttatggctgtt 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gggaccctcccccgtctctttaagaatttaacatctaaaagtgtctattttatggctgtt 203
Query: 541 taaagggtgaaatatagaattatacttaag 570
||||||||||||||||||||||||||||||
Sbjct: 202 taaagggtgaaatatagaattatacttaag 173
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
