Query= MSMg01no349_j05.b1 MSMg01no349_j05.b1 CHROMAT_FILE:
MSMg01no349_j05.b1 PHD_FILE: MSMg01no349_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:13 2005
(504 letters)
>mm_chr4_124624167_124625070
Length = 904
Score = 930 bits (481), Expect = 0.0
Identities = 496/501 (99%)
Strand = Plus / Plus
Query: 4 ggaattcattctgtgtaaatctacatcttccttaaaattttcaaaacagttacagaggct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattctgtgtaaatctacatcttccttaaaattttcaaaacagttacagaggct 263
Query: 64 gggagatggctcagctggtaaagttcccctcgcacatgagggcctgagattgggtcccca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggagatggctcagctggtaaagttcccctcgcacatgagggcctgagattgggtcccca 323
Query: 124 gtacacaaataagagttaggcttgctggcacacatcagtttagaggattggtaagcttca 183
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtatacaaataagagttaggcttgctggcacacatcagtttagaggattggtaagcttca 383
Query: 184 gagtcaaagtgagaccccatctctaaaaaaaccagggtggagaacagcagaggaagacac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagtcaaagtgagaccccatctctaaaaaaaccagggtggagaacagcagaggaagacac 443
Query: 244 tgagctagacctctggcctccttgggcacatgcgcgggcacacatccatccaagcgttca 303
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgagctagacctctggcctcctcgggcacatgcgcgggcacacatccatccaagcgttca 503
Query: 304 tgcacataatgtagaatgctgttacacagtctggtattatgttgctctagtttattgaac 363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcacataacgtagaatgctgttacacagtctggtattatgttgctctagtttattgaac 563
Query: 364 tcgcctcttcctgatggatattgagggtgttcccaaagtcagctctctctgaacgtccac 423
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 564 tcgcctcttcctgatggatattgggggtgttcccaaagtcagctctctctgaaagtccac 623
Query: 424 atttactcagtacactaattgctcccacatactttgggtggggaaataagtgggaattaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atttactcagtacactaattgctcccacatactttgggtggggaaataagtgggaattaa 683
Query: 484 agccatggcctggcccatgct 504
|||||||||||||||||||||
Sbjct: 684 agccatggcctggcccatgct 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_j05.g1 MSMg01no349_j05.g1 CHROMAT_FILE:
MSMg01no349_j05.g1 PHD_FILE: MSMg01no349_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:13 2005
(251 letters)
>mm_chr4_124811535_124812188
Length = 654
Score = 460 bits (238), Expect = e-134
Identities = 249/254 (98%), Gaps = 3/254 (1%)
Strand = Plus / Minus
Query: 1 actctctagttggggcccaaccctgctgcgtgcactcaggactcccacaattctccctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 actctctagttggggcccaaccctgctgcgtgcactcaggactcccacaattctccctga 372
Query: 61 gcccttcagggcagtgattttgggtgatagcctcttacttgccttcaggcccacctcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gcccttcagggcagtgattttgggtgatagcctcttacttgccttcaggcccacctcttt 312
Query: 121 ttggaggttcaaacctctcccccacccc---cccacacaccccatgaaggctgttcactg 177
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 311 ttggaggttcaaacctctcccccaccccacccccccacaccccatgaaggctgttcactg 252
Query: 178 ctgtcaatgttaaggccttcagtcttgctctccagccagaacttgctcttttggggtggg 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctgtcaatgttaagggcttcagtcttgctctccagccagaacttgctcttttggggtggg 192
Query: 238 gtggggtggggtga 251
||||||||||||||
Sbjct: 191 gtggggtggggtga 178
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 654
Length adjustment: 9
Effective length of query: 242
Effective length of database: 645
Effective search space: 156090
Effective search space used: 156090
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
