XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TCCTTTTGCCAATCAGATGCATGTTGGTTTTACCATTGATTCCACCTTAC
TTGCTCTGGAATGGGATCTTCAGTTATAAGCCTCACTCTTCTCATTATGT
GGAGAAGCTGTTCAGCGTGTTCTTTGTTTGTTTTTGTTTGTTGGTGTTGG
TTTTCTTTTGTTGTTGTGTTTGTTTGCTTTAATCTCACATTACACATTTC
TCTTTGTAGGAAAACTAAAACATTGCTAATATATGTTAGAATAAAGAAAT
CCTATTGAATTTTTTATTGTTTAAATAATGTTAAATAGAACTGCTATGGT
TCACGTTGGTTCTCACTGTTGATCACATCTGTAAGATTACCAATGAGATC
CTAGTATAGCAACTATTTGTATCTATAATTCATGTTTTCATAAAGCTGCT
ATTATTTAAAAGTATCTTTGCTAAGTTTTACTTTAAAACTAATATGATAT
CCACCCTTTATATAACATATCAGGAGGAATACTCTAGTAATATTAATTAT
AATTAAGATAGTAAATATCAATTATAATTATTATTGTTTTCTGATGGCAA
GGACATTGACTTATACCCATTGCCTTACTTCCCACCTAGCTTCACCCTAT
TAATCATCTTTTTTCCCATTTTTACGGTTAATTCCCATTTTATTTTTCCC
TTGCAGATCTCTCTTTTTTGCCCCCTCTTTTTTTCAGCTTTT

CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTAACTCTATACACCACTTT
TTCATTAAGTTATTTGGTTTTATGGAGGTTAATTTCTTGAGTTCTTTATA
TATTTTGGGTATGAGCCCACTATCAGATATGGGGTTAATGATTTTTTTCC
TAGTCTATAGGATGCTGATTTGCCCTACTGACTGTGTCTTTTGCCTTACA
TAAGCTTTTCAATTTCTTGGGGTCTCCTTTATCAATTGATTTTAGTGCCT
GAGCTATTGGAGATGTCTTAGGAAATTTACCCTGTGCCAATAAGTTTATG
GCTCTTTTCTACTTTCTCTTCTATACGATTCAGAGTATCTGGTTTTATTT
TGAAGTCCCTTATCTATTGGACTTGAGCTTTGTATAAGGTGATAAATATA
GATCTATTTTTATTCTCCTGGATACAGACTTCCAGTTAGACCAGCATCAT
TTCTTGAAGATGCTTTCTTTTTTCTATTGCATATTTCTGGCTTATTTGTC
AAAGGTCAAGTCTCCATAAGTTTGTGGTTTTATTTCTGGGACTTCCATTG
ATCGATCTGTCTTTCTCTGTCCAAATAGCTTGTGTGTTTCATCACCATTG
CTTTATAATACAGTTTGAGGTTAGGAGTGATGATTTCTTCCTGTATGTTT
TTTTTTTGCAATGATTTGTTTTCACTACTCTTTCCTTCTGCGGGTTCCG

Query= MSMg01no349_p08.b1 MSMg01no349_p08.b1 CHROMAT_FILE:
MSMg01no349_p08.b1 PHD_FILE: MSMg01no349_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:43 2005
         (466 letters)



>mm_chr4_91792939_91793802
          Length = 864

 Score =  760 bits (393), Expect = 0.0
 Identities = 444/467 (95%), Gaps = 15/467 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatccttttgccaatcagatgcatgttggttttaccattgattccaccttactt 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatccttttgg-aatcagatgcatgttggttttaccattgattccaccttactt 263

                                                                       
Query: 65  gctctggaatgggatcttcagttataagcctcactcttctcattatgtggagaagctgtt 124
           ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 264 gctctggaatgggatcttcagctataagcctcact-ttctcattatgtggagaagctgtt 322

                                                                       
Query: 125 cagcgtgttctttgtttgtttttgtttgttggtgttggttttcttttgttgttgtgtttg 184
           ||||||| |||||||||||||||||||||||||  || |||||||||||||||| |||||
Sbjct: 323 cagcgtgatctttgtttgtttttgtttgttggt--tg-ttttcttttgttgttgggtttg 379

                                                                       
Query: 185 tttgctttaatctcacattacacatttctctttgtaggaaaactaaaacattgctaatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttgctttaatctcacattacacatttctctttgtaggaaaactaaaacattgctaatat 439

                                                                       
Query: 245 atgttagaataaagaaatcctattgaatttttt-----attgtttaaataatgttaaata 299
           |||||||||||||||||||||||||||||||||     ||     |||||||||||||||
Sbjct: 440 atgttagaataaagaaatcctattgaattttttgagggat-----aaataatgttaaata 494

                                                                       
Query: 300 gaactgctatggttcacgttggttctcactgttgatcacatctgtaagattaccaatgag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaactgctatggttcacgttggttctcactgttgatcacatctgtaagattaccaatgag 554

                                                                       
Query: 360 atcctagtatagcaactatttgtatctataattcatgttttcataaagctgctattattt 419
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 555 atcctagtatagcaattatttgtatctagaattcatgttttcataaagctgctattattt 614

                                                          
Query: 420 aaaagtatctttgctaagttttactttaaaactaatatgatatccac 466
           |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 615 aaaagtatttttgctaagttttattttaaaactaatatgatatccac 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 864
Length adjustment: 10
Effective length of query: 456
Effective length of database: 854
Effective search space:   389424
Effective search space used:   389424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)