BAC Information

Click to search

BAC

Clone NameMSMg01-350K15
Chromosome4 (Build37)
Map Location 99,771,191 - 99,771,461
singlet/doubletsinglet
Overlap geneRor1
Upstream geneDock7, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2
Downstream geneUbe2u, LOC277707, LOC621573, Cachd1, LOC100039747, Raver2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350K15.T7 (MSMg01no350_k15.b1)MSMg01-350K15.TJ (MSMg01no350_k15.g1)
ACCAG462222AG462223
length772800
length of high quality
(start - end)
276 (55 - 330)386 (82 - 467)
definitionCHROMAT_FILE: MSMg01no350_k15.b1 PHD_FILE: MSMg01no350_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:40 2005CHROMAT_FILE: MSMg01no350_k15.g1 PHD_FILE: MSMg01no350_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATTGAGTTCCCTTATCAGTCAGCTTTAGCTTTTATT
AGGGATGTTTGGATAATCCTACCTTGATGGCAAGGAGGCACCACCCAGAG
GCATAGGTAGAGGGTGTATGGTCAGATTGCCTCTGGCAGCGCTTGCTTAT
CAGTGATTTACTTTATTGGAAAACACACTAGGCTGTTTTGTTCCTCCAAT
GGCTGGGATACTTAGGGGTTATTTTATTTTACCTTTGTATGTGAGTGTGT
GGTGAATATATGTTTGTGTTTCTGTGGATCTGTGTNCATGTGTAGACATG
TGGGTATTCCTCTGAAGCCAGAGGTCAGTGTTGAGAGTCTTCTTCAATCA
ATCTCTACCTTGATTTTTGAGACACCCCCTCTTACTCCGCTGGAGGTCAT
CTACCCAGCTGGGCTGGCTGCACTTGCCTATGCCTGTGTTTATATGATCC
TTTCCCCTGCATGTTCTGCTGTCGTATGCCTTCCTCTCTTCCTTCTTCAT
TTCGCCCCGCCCCTCTTTCTCCCTTCTCCTTTCTCCTCATTATCTACACC
CTTCCTCTTTCGTCCCACCGTTTCTCCCTTTTTTCCCCTTGCTCTCTTCT
CTCCCTTTTCTTTGTTCTTTACTTAATTCCCCTTTTTTTCCTCCCTTTCT
CTCCTTTGTACTCCTCTTTATCCTCCTACACCTCTCTCCCCCTTCTTCCC
TTCCTCCTCCCTTCACCTCTCC
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATATTGGCTTGGTCTC
TGAACAGGTTTGTGCAGTCTCTTAACTGGTATGAAAAGACCTAGTCCACT
TGTGGGCAGCACCATTCCCTAGGCAGAGGATCCCGAACTATATGAGTGGA
GAAATAAAGCTGATTACAAGCACACAACTGAGCATGTGCATATTGTTACT
CTCTGCTCTGGACTTTGAGTGTGATGTGACCAGCTGTCTTGAGTTCCTGG
TGTTGTGCTGTCCCCCTAGTAATGGACTGTAACCTGGAATTGTGAGCTAA
AATCGAGTCCTCCTCCTTTAGGTGGCTTTTGGTCAGGGTATTTTATCACA
GCAGCAGAAATGAACAGAGATGCTCAGCGTCTCTAAGTCCTAGCTTCCTG
GAAACCAGTAGGAATGTATCATTGGTATAAGGCACTATTTATGTTGTCTA
GTATGTGGATACTACTCTATTATTCTTCCCAAATTATTGCTCCTTTTTAT
TATTTTCTCCCCTATGTTCAACGTCTGTCAAAATTCCTCCTATTCCGGGC
TATAACTCTCCTTTCTTCTTCCTCTTTTTTTTCGGTGCACCCTACCTTTC
TCCTTCCCTCCTTCTATCTATCTCCCTCTCTTGTCCCCTTTTCCTTTCCT
TACTTTCCTGTCTGTTCTTCTCTTCTCCCCTTTCCTTTTTTCCTACTCAC
TTACCTTTACTTCTTCTCCTCCACCTCTCTCGTTATCCCTCCTCATCCCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_k15.b1 MSMg01no350_k15.b1 CHROMAT_FILE:
MSMg01no350_k15.b1 PHD_FILE: MSMg01no350_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:40 2005
         (276 letters)



>mm_chr4_99770987_99771662
          Length = 676

 Score =  485 bits (251), Expect = e-142
 Identities = 266/271 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgagttcccttatcagtcagctttagcttttattagggatgtttggataatc 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgagggcccttatcagtcagctttagcttttattagggatgtttggataatc 264

                                                                       
Query: 65  ctaccttgatggcaaggaggcaccacccagaggcataggtagagggtgtatggtcagatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaccttgatggcaaggaggcaccacccagaggcataggtagagggtgtatggtcagatt 324

                                                                       
Query: 125 gcctctggcagcgcttgcttatcagtgatttactttattggaaaacacactaggctgttt 184
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 gcctctggcagtgcttgcttatcagtgatttactttatttgaaaacacactaggctgttt 384

                                                                       
Query: 185 tgttcctccaatggctgggatacttaggggttattttattttacctttgtatgtgagtgt 244
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 tgttcctccaatggctgggatacttaggggttattttattttacttttgtatgtgagtgt 444

                                          
Query: 245 gtggtgaatatatgtttgtgtttctgtggat 275
           |||||||||||||||||||||||||||||||
Sbjct: 445 gtggtgaatatatgtttgtgtttctgtggat 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)